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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1701 and GFF1702 are separated by 170 nucleotides
GFF1702 and GFF1703 are separated by 167 nucleotides
GFF1703 and GFF1704 overlap by 8 nucleotides
GFF1704 and GFF1705 are separated by 24 nucleotides
GFF1701 - BUG/TctC family periplasmic protein, at 347,303 to 348,307
GFF1701
GFF1702 - hypothetical protein, at 348,478 to 349,164
GFF1702
GFF1703 - DNA for 3-methylaspartate ammonia-lyase, glutamate mutase, at 349,332 to 350,723
GFF1703
GFF1704 - FIG00901292: hypothetical protein, at 350,716 to 351,024
GFF1704
GFF1705 - ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) / C-terminal AAA-associated domain, at 351,049 to 352,410
GFF1705
Group
Condition
GFF1701
GFF1702
GFF1703
GFF1704
GFF1705
complex community
Community=Kojac gum; Passage=4
+0.0
-0.3
-0.7
-0.4
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.9
+0.2
-0.3
+0.3
complex community
Community=arabino-guar; Passage=4
-0.2
-0.9
-0.1
+0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
-0.0
+0.0
-0.5
-0.2
phage
phage_bap4
-0.3
-0.0
-0.2
-0.3
-0.2
no phage control
no phage control
-0.1
-0.1
-0.0
-0.6
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.0
+0.0
-0.6
-0.3
phage
phage_bap4
-0.0
-0.2
-0.1
-0.5
+0.0
phage
phage_bap4
-0.2
-0.2
-0.1
-0.3
-0.0
complex community
Community=guar; Passage=4
-0.0
-0.3
-0.4
+0.4
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
-0.2
-0.1
-0.1
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.0
+0.2
-0.5
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
-0.1
-0.0
-0.3
-0.3
complex community
Community=arabino-guar; Passage=4
-0.5
-0.1
+0.0
+0.3
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
+0.2
-0.3
-0.2
-0.3
phage
phage_bap4
-0.2
-0.3
-0.0
+0.1
-0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.1
-0.2
-0.4
-0.0
complex community
Community=Locust bean gum; Passage=1
+0.1
-0.1
+0.1
-0.4
+0.0
complex community
Community=Kojac gum; Passage=1
-0.0
-0.2
+0.1
+0.1
-0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.2
+0.2
-0.3
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.3
-0.0
-0.1
-0.3
phage
phage_bap4
-0.3
+0.0
-0.1
+0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.2
+0.0
-0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
+0.3
-0.1
+0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.1
+0.2
+0.2
-0.3
complex community
Community=guar; Passage=4
-0.3
-0.4
+0.2
+0.6
+0.0
complex community
Community=guar; Passage=4
+0.1
-0.2
+0.5
-0.2
-0.1
complex community
Community=guar; Passage=4
-0.1
-0.5
+0.0
+1.1
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.5
+0.1
+0.4
+0.3
+0.5
complex community
Community=Locust bean gum; Passage=4
+0.2
+0.3
+0.3
+0.5
-0.0
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