Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08635	PS417_08640	PS417_08645	PS417_08650	PS417_08655
stress	Cisplatin 0.01 mg/ml	-0.3	-0.4	N.D.	-3.1	-0.1
stress	Gentamicin 0.008 mg/ml	-0.5	-0.3	N.D.	-1.4	-0.6
phage	Wcs_0.1	-0.4	-0.7	N.D.	-1.3	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.0	-0.4	N.D.	-0.6	-1.0
phage	Wcs_1	-0.4	-0.2	N.D.	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	N.D.	-0.6	-0.6
seeds	Growth on radish seeds for 72 hours	+0.0	-0.7	N.D.	-0.7	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.4	N.D.	-1.1	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	-0.4	N.D.	-0.2	-0.8
phage	JP1 MOI 0.1	+0.2	-0.7	N.D.	-0.7	+0.2
seeds	Growth on radish seeds for 72 hours	-0.4	-0.5	N.D.	+0.6	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.8	N.D.	+0.6	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	+0.4	N.D.	-0.9	-0.5
stress	methylglyoxal 0.032 vol%	+0.2	+0.6	N.D.	-1.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.5	N.D.	-0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	N.D.	-0.4	-0.4
root	root sample 6; outgrowth in LB	-0.3	+0.3	N.D.	-0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.0	N.D.	-0.7	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	N.D.	-0.6	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.3	N.D.	+1.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.3	N.D.	-0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.5	N.D.	+0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-0.1	N.D.	+1.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+1.1	N.D.	+0.4	-0.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+0.1	N.D.	+0.9	-0.1
carbon source	L-Valine (C)	+0.4	+0.7	N.D.	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.4	N.D.	+0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.9	N.D.	-0.3	+0.1
soil	soil sample 2; outgrowth in LB	-0.0	+0.1	N.D.	+1.4	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	N.D.	+0.6	+0.8