Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08630	PS417_08635	PS417_08640	PS417_08645	PS417_08650
stress	Cisplatin 0.01 mg/ml	N.D.	-0.3	-0.4	N.D.	-3.1
phage	Wcs_0.1	N.D.	-0.4	-0.7	N.D.	-1.3
stress	Gentamicin 0.008 mg/ml	N.D.	-0.5	-0.3	N.D.	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	-0.4	N.D.	-1.1
phage	Wcs_1	N.D.	-0.4	-0.2	N.D.	-0.8
seeds	Growth on radish seeds for 72 hours	N.D.	+0.0	-0.7	N.D.	-0.7
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	-0.0	-0.3	N.D.	-1.0
phage	JP1 MOI 0.1	N.D.	+0.2	-0.7	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	-0.2	N.D.	-0.9
phage	P. simiae Grant Run MOI 10	N.D.	+0.2	-0.3	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.8	N.D.	+0.6
stress	methylglyoxal 0.032 vol%	N.D.	+0.2	+0.6	N.D.	-1.4
seeds	Growth on radish seeds for 72 hours	N.D.	-0.4	-0.5	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.7	-0.5	N.D.	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.4	+0.4	N.D.	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.6	N.D.	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.5	+0.5	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	-0.3	N.D.	+1.1
no phage control	Time6-nophage	N.D.	+0.1	-0.1	N.D.	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	+0.7	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.1	N.D.	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.4	N.D.	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.3	-0.1	N.D.	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.2	+1.1	N.D.	+0.4
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.4	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.8	+0.9	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	+0.6	N.D.	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.4	+0.1	N.D.	+0.9
soil	soil sample 2; outgrowth in LB	N.D.	-0.0	+0.1	N.D.	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.5	N.D.	+0.5