Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08600	PS417_08605	PS417_08610	PS417_08615	PS417_08620
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.4	+0.3	-1.4	-5.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.4	-0.5	-0.1	+0.2	-3.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+0.4	-0.5	-3.5
phage	Wcs_1	-0.3	-0.1	+0.1	-0.0	-3.2
soil	soil sample 3; outgrowth in LB	-0.3	-0.7	-0.1	+0.3	-2.5
phage	P. simiae Grant Run MOI 0.1	-0.2	+0.0	+0.0	-0.7	-2.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.2	+0.1	-0.2	-2.7
soil	soil sample 5; outgrowth in LB	-0.1	-0.1	+0.0	-0.9	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	+0.1	+0.1	-3.3
phage	P. simiae ORA MOI 0.1	+0.2	+0.0	-0.2	+0.1	-2.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-0.1	-0.0	+0.4	-3.1
phage	P. simiae OR Antrim MOI 1	-0.1	+0.1	+0.4	-0.4	-2.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	-0.1	-0.2	-2.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.8	-0.3	+0.2	-2.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.1	+0.1	+0.6	-3.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.2	-0.0	+0.4	-1.9
seeds	Growth on radish seeds for 72 hours	-0.1	+0.5	-0.1	+0.1	-2.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.1	+0.2	+1.0	-2.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.0	+0.1	+0.2	-2.2
stress	methylglyoxal 0.032 vol%	+0.2	+0.2	+0.3	+0.5	-1.9
carbon source	Carbon source D-Mannitol 2.5 mM	+0.5	-0.2	+0.2	+0.3	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	+0.4	+0.6	+0.1	-1.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.6	+0.6	+0.3	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.2	+0.1	+1.2	-1.1
carbon source	L-Valine (C)	+0.3	+0.7	-0.6	+0.2	+0.9
phage	JP1 MOI 10	+0.2	+0.5	+0.4	-0.7	+1.1
seeds	Growth on radish seeds for 72 hours	-0.1	-0.5	+0.2	+0.4	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	+0.3	+0.5	-0.3	+1.7
carbon source	Trisodium citrate (C)	+0.2	+0.9	+0.0	+0.2	+1.5
agar plate interaction control	Taped volatile agar plate with no fungus	+0.9	+0.7	+0.2	+0.4	+0.8