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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1686 and GFF1687 overlap by 4 nucleotides
GFF1687 and GFF1688 are separated by 19 nucleotides
GFF1688 and GFF1689 are separated by 39 nucleotides
GFF1689 and GFF1690 are separated by 21 nucleotides
GFF1686 - Uncharacterized protein Bsu YraM, at 330,647 to 331,819
GFF1686
GFF1687 - BUG/TctC family periplasmic protein, at 331,816 to 332,793
GFF1687
GFF1688 - FIG00828468: hypothetical protein, at 332,813 to 334,240
GFF1688
GFF1689 - BUG/TctC family periplasmic protein, at 334,280 to 335,272
GFF1689
GFF1690 - KEGG: DNA-binding protein H-NS, at 335,294 to 335,647
GFF1690
Group
Condition
GFF1686
GFF1687
GFF1688
GFF1689
GFF1690
complex community
Community=Locust bean gum; Passage=4
-0.8
+1.4
-0.1
+0.1
-3.8
complex community
Community=arabino-guar; Passage=4
-1.6
-0.5
-1.2
+0.3
+1.1
complex community
Community=arabino-guar; Passage=4
-0.4
-0.1
-0.3
-0.0
-0.5
phage
phage_bap4
-0.3
-0.1
-0.2
+0.0
-0.4
complex community
Community=guar; Passage=4
-0.9
+0.2
+0.1
+0.2
-0.4
complex community
Community=guar; Passage=4
+0.3
-0.3
-0.1
-0.1
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
-0.3
+0.1
+0.1
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.3
-0.1
+0.1
-0.5
complex community
Community=Kojac gum; Passage=4
+0.9
-0.4
-0.4
+0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
+0.7
+0.1
+0.1
-1.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.9
+0.3
+0.3
+0.2
+0.3
phage
phage_bap4
-0.1
-0.0
-0.3
+0.0
+0.7
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.5
-0.3
+0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
+0.2
-0.3
+0.0
+0.7
complex community
Community=Kojac gum; Passage=1
-0.4
+0.1
+0.2
+0.0
+0.4
complex community
Community=arabino-guar; Passage=4
-0.0
+0.2
+0.1
-0.3
+0.5
complex community
Community=guar; Passage=4
+0.9
-0.1
+0.4
-0.6
-0.1
phage
phage_bap4
-0.5
+0.3
+0.2
+0.2
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.2
-0.2
+0.1
+0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.3
+0.0
+0.0
+0.7
vitamin
M9 with Supernatant from Cyptococcus
+0.4
+0.3
-0.3
+0.1
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.8
-0.1
+0.2
-0.1
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
+0.4
+0.4
+0.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.1
-0.0
+0.1
+1.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
+0.4
-0.2
+0.2
+0.5
vitamin
M9 with Supernatant from Cyptococcus
+0.7
+0.5
+0.1
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.5
+0.2
-0.1
+0.0
+0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.7
+0.3
-0.0
+0.2
+0.6
complex community
Community=guar; Passage=4
-0.1
+0.2
+0.5
+0.2
+1.3
complex community
Community=Locust bean gum; Passage=4
+0.6
+0.3
+0.5
-0.3
+1.1
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