Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08570 and PS417_08575 overlap by 4 nucleotidesPS417_08575 and PS417_08580 overlap by 47 nucleotidesPS417_08580 and PS417_08585 are separated by 164 nucleotidesPS417_08585 and PS417_08590 overlap by 4 nucleotides PS417_08570: PS417_08570 - glutathione peroxidase, at 1,871,729 to 1,872,214 _08570 PS417_08575: PS417_08575 - MarR family transcriptional regulator, at 1,872,211 to 1,872,690 _08575 PS417_08580: PS417_08580 - histidine kinase, at 1,872,644 to 1,874,953 _08580 PS417_08585: PS417_08585 - ATPase AAA, at 1,875,118 to 1,876,008 _08585 PS417_08590: PS417_08590 - hypothetical protein, at 1,876,005 to 1,876,487 _08590
Group Condition PS417_08570 PS417_08575 PS417_08580 PS417_08585 PS417_08590
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.0 -2.6 -1.6 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 -4.0 -0.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -2.8 -0.5 -0.9
soil soil sample 5; outgrowth in LB N.D. -0.7 -1.2 -1.4 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 -3.1 +0.0 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -2.0 -0.2 -0.9
phage P. simiae ORA MOI 0.1 N.D. -0.3 -0.8 -0.7 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.4 -4.1 +0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.8 -1.7 -0.4 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -3.6 -0.2 +0.2
phage P. simiae OR Antrim MOI 0.1 N.D. -0.0 -1.6 -0.2 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -3.0 -0.3 +0.2
stress methylglyoxal 0.032 vol% N.D. -1.0 -2.9 +0.9 +0.2
soil soil sample 3; outgrowth in LB N.D. +0.1 -2.3 -0.7 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.3 -1.9 +0.6 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -2.7 +0.4 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.6 -2.0 -0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.0 -1.0 +0.5 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -2.9 +0.6 +0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -0.3 +0.6 -0.7 -1.6
soil soil sample 7; outgrowth in LB N.D. +0.2 -2.4 +1.0 -0.9
soil soil sample 6; outgrowth in LB N.D. +0.2 -2.6 +0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.9 -1.9 +0.5 -1.2
root root sample 6; outgrowth in LB N.D. -0.0 -2.6 +1.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 -1.6 +0.8 +0.7
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.5 -2.0 +0.5 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.4 -1.5 +0.8 +0.8
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.6 -1.7 -0.3 +1.2
phage Wcs_1 N.D. +0.6 +2.7 -1.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.6 -1.0 +1.6 +0.4
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