Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00835	PS417_00840	PS417_00845	PS417_00850	PS417_00855
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.2	-2.4	N.D.	+0.0
phage	JP1 MOI 10	-0.8	+0.2	-1.3	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-0.0	-1.3	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	-1.9	N.D.	+0.1
phage	P. simiae Grant Run MOI 10	-0.0	+0.4	-1.3	N.D.	-0.3
soil	soil sample 6; outgrowth in LB	-0.1	+0.4	-1.5	N.D.	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.2	-1.4	N.D.	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	+0.3	-2.1	N.D.	+0.3
phage	P. simiae Grant Run MOI 0.1	+0.3	+0.2	-1.2	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.1	-1.4	N.D.	-0.1
seeds	Growth on radish seeds for 72 hours	+0.6	+0.3	-1.0	N.D.	-0.2
soil	soil sample 4; outgrowth in LB	+0.7	+0.3	-1.4	N.D.	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+0.2	-1.0	N.D.	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	+0.1	+1.2	N.D.	-0.6
soil	soil sample 7; outgrowth in LB	-0.2	-0.1	+1.5	N.D.	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	-0.1	+2.4	N.D.	-0.4
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.5	+0.2	+1.0	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.7	+0.2	+0.8	N.D.	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	+0.3	+1.3	N.D.	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	+0.4	+1.2	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.5	+0.4	+1.0	N.D.	+0.2
seeds	Growth on radish seeds for 72 hours	+0.3	-0.0	+1.6	N.D.	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.7	+0.3	+1.1	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.2	+1.3	N.D.	-0.2
seeds	Growth on radish seeds for 24 hours	+0.7	+0.3	+1.2	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	+0.4	+1.0	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.7	+0.4	+1.1	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.7	+0.4	+1.1	N.D.	+0.1
supernatant control	Vogels_fungal_media; pH 5.5	+0.8	+0.4	+0.9	N.D.	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	+0.7	+0.4	+1.0	N.D.	+0.3