Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08525 and PS417_08530 are separated by 123 nucleotidesPS417_08530 and PS417_08535 are separated by 118 nucleotidesPS417_08535 and PS417_08540 are separated by 422 nucleotidesPS417_08540 and PS417_08545 are separated by 96 nucleotides PS417_08525: PS417_08525 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 1,861,670 to 1,863,016 _08525 PS417_08530: PS417_08530 - spermidine synthase, at 1,863,140 to 1,863,895 _08530 PS417_08535: PS417_08535 - enoyl-CoA hydratase, at 1,864,014 to 1,864,805 _08535 PS417_08540: PS417_08540 - RNA helicase, at 1,865,228 to 1,866,901 _08540 PS417_08545: PS417_08545 - aromatic ring-opening dioxygenase LigB, at 1,866,998 to 1,867,765 _08545
Group Condition PS417_08525 PS417_08530 PS417_08535 PS417_08540 PS417_08545
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.6 -0.4 -5.7 -3.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -1.1 +0.4 -7.5 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.6 +0.4 -2.5 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.3 -0.4 -5.7 -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.4 -0.3 -4.2 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.6 -0.7 -5.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.1 -0.6 -4.0 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.3 +0.4 -3.6 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 +0.3 -0.7 -5.1 +0.5
phage Wcs_1 -0.2 -0.6 -0.4 -1.9 -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -1.5 -0.1 -2.0 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.4 -0.5 -4.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.0 -0.1 -3.9 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.4 -0.0 -4.5 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.3 -0.5 -3.2 -0.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.2 -0.2 -3.1 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 -0.2 -0.5 -1.7 -1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.2 +0.0 -2.5 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.8 -0.3 -2.3 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -0.6 -1.2 -0.6 -1.2
seeds Growth on radish seeds for 24 hours -0.1 -0.1 -1.1 -0.6 -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.1 -0.9 -2.9 +0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.1 -0.4 -2.4 -1.3
phage P. simiae Grant Run MOI 10 -0.2 +0.4 -0.6 -1.9 -1.5
carbon source octanoate (C) -0.0 +0.4 -0.2 -3.1 -0.4
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.0 +0.3 +0.2 -3.8 +0.1
phage JP1 MOI 10 +0.1 +0.8 -0.1 -0.1 -3.9
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 -0.2 -0.6 -2.8 +0.1
stress Gentamicin 0.008 mg/ml -0.1 +1.3 -0.2 -3.8 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.6 -0.2 -2.9 +0.1
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PS417_08525
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PS417_08530
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PS417_08540
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