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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1673 and GFF1674 are separated by 795 nucleotides
GFF1674 and GFF1675 are separated by 17 nucleotides
GFF1675 and GFF1676 overlap by 26 nucleotides
GFF1676 and GFF1677 are separated by 632 nucleotides
GFF1673 - Flagellar transcriptional activator FlhD, at 58,138 to 58,479
GFF1673
GFF1674 - Universal stress protein C, at 59,275 to 59,703
GFF1674
GFF1675 - Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15), at 59,721 to 61,142
GFF1675
GFF1676 - Trehalose-6-phosphate phosphatase (EC 3.1.3.12), at 61,117 to 61,920
GFF1676
GFF1677 - DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31, at 62,553 to 63,110
GFF1677
Group
Condition
GFF1673
GFF1674
GFF1675
GFF1676
GFF1677
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
-0.1
-0.7
-0.3
-0.2
+0.3
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-1.1
-0.0
+0.1
-0.3
+0.3
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
-0.7
-0.2
+0.3
-0.1
-0.2
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
-0.6
-0.1
-0.4
-0.0
+0.4
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.1
-0.6
-0.3
+0.5
-0.1
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.2
-0.4
+0.1
-0.3
+0.5
lb_plus_sm_buffer
LB_plus_SM_buffer
+0.6
-0.7
-0.2
-0.0
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+1.3
-0.7
-0.7
+0.0
+0.1
phage
LB_plus_SM_buffer with 6F2_phage 0.01875 MOI
+0.1
-0.8
+0.6
+0.2
-0.1
nophagecontrol
No phage control
+0.4
-0.4
-0.4
+0.4
-0.0
phage
LB_plus_SM_buffer with EIP16_phage 0.875 MOI
+1.3
-0.6
-1.0
+0.6
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
+2.3
-1.6
-1.2
+0.5
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+1.8
-1.2
-0.8
+0.3
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
+1.3
-0.5
-0.5
+0.2
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
+1.7
-0.8
-0.8
+0.4
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
+2.7
-1.9
-1.6
+1.3
-0.1
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.5
+0.3
+0.3
-0.3
+0.6
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+1.6
-0.8
-0.7
+0.7
-0.1
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
+0.8
-0.4
+0.4
-0.4
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+1.5
-0.5
-0.4
+0.4
-0.2
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+1.8
-0.8
-0.6
+0.3
+0.0
phage
6H2_phage 10 MOI; agar plate assay
-0.7
+1.0
+0.1
+0.7
-0.2
micoeukaryotes
C.elegans, mixed culture-2
+0.7
+0.7
-0.1
-0.1
-0.1
phage
LB_plus_SM_buffer with phi19h1_phage 0.1875 MOI
+0.9
+0.3
-0.0
-0.3
+0.2
phage
LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
+1.2
-0.4
-0.1
+0.6
-0.1
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
+0.4
-0.4
+1.1
+0.4
-0.3
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
+0.7
-0.3
+1.5
-0.0
-0.2
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
+0.6
+1.1
+0.1
-0.1
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
+2.2
-0.5
-0.6
+0.7
+0.3
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+0.1
+1.4
+1.0
+0.8
-0.6
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