Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1672 and GFF1673 are separated by 30 nucleotidesGFF1673 and GFF1674 overlap by 4 nucleotidesGFF1674 and GFF1675 overlap by 8 nucleotidesGFF1675 and GFF1676 overlap by 4 nucleotides GFF1672 - BUG/TctC family periplasmic protein, at 317,860 to 318,825 GFF1672 GFF1673 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 318,856 to 319,566 GFF1673 GFF1674 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 319,563 to 320,324 GFF1674 GFF1675 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 320,317 to 321,297 GFF1675 GFF1676 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 321,294 to 322,166 GFF1676
Group Condition GFF1672 GFF1673 GFF1674 GFF1675 GFF1676
complex community Community=Kojac gum; Passage=4 +0.4 -0.6 N.D. -0.8 -0.1
complex community Community=arabino-guar; Passage=4 -0.1 +0.1 N.D. -0.3 -0.7
complex community Community=arabino-guar; Passage=4 +0.1 -0.8 N.D. +0.1 -0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.4 -0.7 N.D. -0.2 +0.2
complex community Community=arabino-guar; Passage=4 -0.8 -0.2 N.D. +0.3 -0.2
phage phage_bap4 -0.3 -0.6 N.D. -0.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.9 -0.3 N.D. +0.0 +0.4
complex community Community=guar; Passage=4 -1.7 +0.6 N.D. +0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.5 -0.4 N.D. +0.2 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 -0.4 N.D. -0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.4 N.D. -0.2 +0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 -0.6 N.D. +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.4 N.D. +0.3 -0.1
phage phage_bap4 +0.2 -0.5 N.D. +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.4 N.D. +0.0 +0.5
complex community Community=Locust bean gum; Passage=4 -0.4 -0.0 N.D. -0.4 +0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 +0.2 N.D. -0.2 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.1 N.D. +0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus -0.2 -0.1 N.D. +0.2 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.6 +0.4 N.D. +0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.3 N.D. +0.0 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 +0.2 N.D. +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.4 -0.4 N.D. +0.0 +0.3
no phage control no phage control +0.5 -0.2 N.D. +0.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.3 +0.5 N.D. +0.1 +0.5
complex community Community=Locust bean gum; Passage=4 +0.5 +0.6 N.D. +0.2 -0.3
complex community Community=Locust bean gum; Passage=1 +0.5 +0.2 N.D. +0.3 +0.2
complex community Community=Locust bean gum; Passage=4 +0.4 +0.7 N.D. -0.1 +0.4
complex community Community=arabino-guar; Passage=4 +0.8 +1.1 N.D. -0.0 -0.1
complex community Community=guar; Passage=4 +0.6 +1.0 N.D. -0.1 +0.5
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