Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08480 and PS417_08485 are separated by 64 nucleotidesPS417_08485 and PS417_08490 are separated by 28 nucleotidesPS417_08490 and PS417_08495 are separated by 175 nucleotidesPS417_08495 and PS417_08500 are separated by 80 nucleotides PS417_08480: PS417_08480 - elongation factor P, at 1,854,517 to 1,855,089 _08480 PS417_08485: PS417_08485 - alpha/beta hydrolase, at 1,855,154 to 1,856,170 _08485 PS417_08490: PS417_08490 - organic hydroperoxide resistance protein, at 1,856,199 to 1,856,618 _08490 PS417_08495: PS417_08495 - MarR family transcriptional regulator, at 1,856,794 to 1,857,246 _08495 PS417_08500: PS417_08500 - LysR family transcriptional regulator, at 1,857,327 to 1,858,277 _08500
Group Condition PS417_08480 PS417_08485 PS417_08490 PS417_08495 PS417_08500
soil soil sample 5; outgrowth in LB N.D. -0.2 N.D. N.D. -0.8
agar plate interaction control Taped volatile agar plate with no fungus N.D. -0.2 N.D. N.D. -0.8
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -0.3 N.D. N.D. -0.5
soil soil sample 3; outgrowth in LB N.D. -0.2 N.D. N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.6 N.D. N.D. -0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.1 N.D. N.D. -0.6
stress 6-methoxy-2(3H)-benzoxazolone 1.2 mM N.D. +0.1 N.D. N.D. -0.6
carbon source L-Valine (C) N.D. +0.4 N.D. N.D. -0.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.2 N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.2 N.D. N.D. -0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.2 N.D. N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.4 N.D. N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.5 N.D. N.D. +0.4
carbon source Carbon source L-Ornithine 5 mM N.D. -0.3 N.D. N.D. +0.4
stress methylglyoxal 0.032 vol% N.D. -0.4 N.D. N.D. +0.5
soil soil sample 8; outgrowth in LB N.D. -0.2 N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 N.D. N.D. +0.6
stress nitrate 200 mM N.D. +0.2 N.D. N.D. +0.5
carbon source D-Lactate (C) N.D. +0.2 N.D. N.D. +0.5
stress Gentamicin 0.008 mg/ml N.D. -0.0 N.D. N.D. +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 N.D. N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. +0.2 N.D. N.D. +0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 N.D. N.D. +0.8
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.4 N.D. N.D. +0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.2 N.D. N.D. +0.7
phage JP1 MOI 1 N.D. +0.3 N.D. N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.0 N.D. N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.6 N.D. N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.8 N.D. N.D. +0.4
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PS417_08485
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PS417_08495
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