Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08475 and PS417_08480 are separated by 49 nucleotidesPS417_08480 and PS417_08485 are separated by 64 nucleotidesPS417_08485 and PS417_08490 are separated by 28 nucleotidesPS417_08490 and PS417_08495 are separated by 175 nucleotides PS417_08475: PS417_08475 - hypothetical protein, at 1,853,334 to 1,854,467 _08475 PS417_08480: PS417_08480 - elongation factor P, at 1,854,517 to 1,855,089 _08480 PS417_08485: PS417_08485 - alpha/beta hydrolase, at 1,855,154 to 1,856,170 _08485 PS417_08490: PS417_08490 - organic hydroperoxide resistance protein, at 1,856,199 to 1,856,618 _08490 PS417_08495: PS417_08495 - MarR family transcriptional regulator, at 1,856,794 to 1,857,246 _08495
Group Condition PS417_08475 PS417_08480 PS417_08485 PS417_08490 PS417_08495
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -0.5 N.D. N.D.
soil soil sample 7; outgrowth in LB N.D. N.D. -0.4 N.D. N.D.
stress methylglyoxal 0.032 vol% N.D. N.D. -0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -0.4 N.D. N.D.
carbon source Carbon source D-Mannitol 10 mM N.D. N.D. -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.3 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -0.3 N.D. N.D.
phage P. simiae Grant Run MOI 10 N.D. N.D. -0.3 N.D. N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -0.3 N.D. N.D.
carbon source Carbon source L-Ornithine 5 mM N.D. N.D. -0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.3 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.3 N.D. N.D.
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. +0.3 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. +0.3 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. +0.3 N.D. N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. +0.3 N.D. N.D.
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. +0.3 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +0.3 N.D. N.D.
carbon source L-Valine (C) N.D. N.D. +0.4 N.D. N.D.
root root sample 6; outgrowth in LB N.D. N.D. +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +0.4 N.D. N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. +0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.4 N.D. N.D.
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. +0.4 N.D. N.D.
liquid stress Scopoletin 3 mM; liquid stress N.D. N.D. +0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.8 N.D. N.D.
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