Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1662 and GFF1663 are separated by 1050 nucleotidesGFF1663 and GFF1664 overlap by 4 nucleotidesGFF1664 and GFF1665 overlap by 4 nucleotidesGFF1665 and GFF1666 overlap by 4 nucleotides GFF1662 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 304,568 to 306,055 GFF1662 GFF1663 - Isocitrate lyase (EC 4.1.3.1), at 307,106 to 307,972 GFF1663 GFF1664 - redox proteins related to the succinate dehydrogenases and fumarate reductases, at 307,969 to 309,384 GFF1664 GFF1665 - Nicotinamidase/isochorismatase family protein, at 309,381 to 309,995 GFF1665 GFF1666 - N-methylhydantoinase A (EC 3.5.2.14), at 309,992 to 312,049 GFF1666
Group Condition GFF1662 GFF1663 GFF1664 GFF1665 GFF1666
complex community Community=guar; Passage=4 +0.3 -2.7 +0.1 -0.7 -0.0
complex community Community=Locust bean gum; Passage=4 +0.1 +0.5 -0.2 -3.1 +0.1
complex community Community=arabino-guar; Passage=4 -0.1 +0.5 -0.7 -0.9 -1.0
complex community Community=Locust bean gum; Passage=4 +0.3 -0.9 -0.2 -0.3 -0.1
phage phage_bap4 -0.0 +0.3 -0.6 -0.5 -0.2
complex community Community=guar; Passage=4 -0.1 +0.2 -1.3 +0.2 -0.0
phage phage_bap4 +0.1 -0.3 -0.3 -0.2 +0.0
phage phage_bap4 -0.1 -0.2 -0.2 -0.5 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 -0.4 +0.2 -0.6 +0.1
complex community Community=arabino-guar; Passage=4 -0.2 -0.8 -0.2 +0.2 +0.3
no phage control no phage control +0.1 +0.3 -0.0 -0.8 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.2 +0.1 -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.2 -0.5 +0.3 +0.0
complex community Community=arabino-guar; Passage=4 -0.3 +0.5 -0.9 +0.2 +0.3
phage phage_bap4 -0.0 +0.1 -0.3 -0.2 +0.2
complex community Community=Locust bean gum; Passage=4 -0.2 +0.0 -0.3 -0.3 +0.7
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.2 +0.1 +0.3 -0.5
complex community Community=Locust bean gum; Passage=1 +0.2 +0.3 +0.1 -0.4 -0.1
phage phage_bap4 +0.1 -0.1 -0.2 -0.1 +0.5
complex community Community=Locust bean gum; Passage=4 +0.0 +0.7 -0.2 +0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.3 +0.2 +0.4 +0.0
complex community Community=guar; Passage=4 +0.0 +0.6 -0.5 -0.4 +0.6
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.1 -0.6 +0.4 +0.7 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.2 +0.3 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.1 +0.4 +0.5 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.0 -0.1 +0.3 +0.5 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 +0.3 +0.1 +0.1 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.1 -0.1 +0.7 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 -0.1 +0.1 +0.6 +0.4
complex community Community=guar; Passage=4 +0.3 +0.8 +0.6 +0.1 +1.0
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