Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08450	PS417_08455	PS417_08460	PS417_08465	PS417_08470
root	root sample 6; outgrowth in LB	+0.4	-0.9	N.D.	-0.6	+0.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.4	-0.3	N.D.	-0.7	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.5	-0.3	N.D.	-0.8	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.3	N.D.	+0.5	-0.7
soil	soil sample 5; outgrowth in LB	+0.5	-1.1	N.D.	+0.1	-0.2
supernatant control	Vogels_fungal_media 0.1X	-0.5	-0.4	N.D.	+0.4	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.5	-0.6	N.D.	-0.2	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.5	-0.6	N.D.	-0.5	+0.2
soil	soil sample 4; outgrowth in LB	+0.3	-0.6	N.D.	+0.1	-0.2
soil	soil sample 8; outgrowth in LB	+0.2	-0.8	N.D.	+0.5	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.3	-1.1	N.D.	+0.3	+0.1
stress	1-ethyl-3-methylimidazolium acetate 35 mM	+0.4	+0.2	N.D.	-0.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.0	N.D.	-0.7	+0.4
soil	soil sample 2; outgrowth in LB	+0.4	-0.4	N.D.	+0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.2	N.D.	+0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	N.D.	-0.5	+0.4
stress	Gentamicin 0.008 mg/ml	-0.1	+0.6	N.D.	+0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.1	N.D.	+0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.0	N.D.	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.3	N.D.	+1.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.0	N.D.	+0.9	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.8	N.D.	-0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.4	N.D.	+0.8	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.3	N.D.	+0.0	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.1	N.D.	+1.5	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.0	N.D.	+0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.3	N.D.	+0.4	+0.9
stress	R2A with Fusaric 120 ug/mL	+0.0	+0.3	N.D.	+0.8	+0.4
carbon source	L-Valine (C)	+0.5	+0.4	N.D.	+0.4	+0.3
phage	P. simiae OR1 MOI 0.1	+0.5	+0.2	N.D.	+0.6	+0.4