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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1660 and GFF1661 overlap by 8 nucleotides
GFF1661 and GFF1662 are separated by 193 nucleotides
GFF1662 and GFF1663 are separated by 10 nucleotides
GFF1663 and GFF1664 are separated by 17 nucleotides
GFF1660 - Flagellar biosynthesis protein FlhA, at 44,633 to 46,711
GFF1660
GFF1661 - Flagellar biosynthesis protein FlhB, at 46,704 to 47,855
GFF1661
GFF1662 - Chemotaxis response - phosphatase CheZ, at 48,049 to 48,693
GFF1662
GFF1663 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 48,704 to 49,093
GFF1663
GFF1664 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 49,111 to 50,160
GFF1664
Group
Condition
GFF1660
GFF1661
GFF1662
GFF1663
GFF1664
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
-1.0
-0.5
-0.9
+0.1
-0.0
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.8
-0.5
-0.5
+0.1
+0.1
phage
LB_plus_SM_buffer with 6D2_phage 0.75 MOI
-0.8
-0.6
-0.4
+0.4
-0.2
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.9
-0.3
-0.3
-0.1
+0.2
phage
phi19h1_phage 15 MOI
-0.7
-0.2
-0.9
+0.4
+0.1
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
-1.1
+0.2
-0.4
-0.3
+0.2
phage
phi19h1_phage 15 MOI
-0.7
-0.2
-0.8
+0.1
+0.2
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-0.7
-0.2
-0.8
+0.4
+0.3
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
+0.4
+0.6
-0.4
-1.0
-0.2
phage
Ffm_phage 10 MOI; agar plate assay
+0.3
+0.2
+0.6
-1.2
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
+1.0
+1.0
-1.6
+0.0
+0.2
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
+0.7
+0.6
+0.4
-0.5
-0.1
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
+0.9
+0.2
-0.1
+0.6
-0.3
phage
LB_plus_SM_buffer with EIP16_phage 0.875 MOI
+1.0
+0.8
-0.4
+0.3
-0.3
phage
LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
+0.9
+0.7
+0.0
-0.1
-0.0
lb_plus_sm_buffer
LB_plus_SM_buffer
+0.6
+0.7
+0.5
-0.0
-0.2
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+1.2
+1.1
-0.2
-0.4
-0.1
phage
LB_plus_SM_buffer with Ffm_phage 0.0001875 MOI
+0.5
+0.5
+0.4
+0.1
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+1.2
+1.5
-1.1
-0.2
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
+1.1
+1.1
-0.6
+0.2
+0.0
phage
LB_plus_SM_buffer with Br60_phage 0.00005 MOI
+0.4
+0.7
+0.4
+0.3
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
+0.9
+1.0
-0.0
+0.3
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+1.2
+1.4
-0.6
+0.2
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+0.9
+1.2
-0.4
+0.2
+0.5
phage
LB_plus_SM_buffer with EIP30_phage 0.0000875 MOI
+0.8
+0.8
+0.6
+0.2
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
+1.5
+1.4
-1.1
+0.5
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.4
+0.8
+0.3
+0.6
+0.4
phage
LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
+0.8
+1.0
+0.4
+0.3
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
+1.1
+1.2
-0.4
+0.6
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+1.0
+1.3
-0.2
+0.5
+0.2
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