Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00825	PS417_00830	PS417_00835	PS417_00840	PS417_00845
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.5	-0.1	+0.4	+0.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.7	-0.5	+0.2	-2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.1	+0.7	+0.1	-1.4
nitrogen source	Adenine (N)	+0.3	-1.3	+0.1	-0.1	-0.8
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.3	-1.9	-0.2	+0.0	+0.6
soil	soil sample 6; outgrowth in LB	-0.5	+0.4	-0.1	+0.4	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.5	+0.2	-0.1	-1.9
soil	soil sample 4; outgrowth in LB	-0.7	+0.1	+0.7	+0.3	-1.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.5	+0.2	+0.5	+0.3	-2.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1	+1.0	-0.1	-0.3	+0.2
seeds	Growth on radish seeds for 72 hours	-0.7	+0.7	+0.6	+0.3	-1.0
phage	P. simiae Grant Run MOI 10	+0.9	+0.0	-0.0	+0.4	-1.3
soil	soil sample 7; outgrowth in LB	-0.7	-0.2	-0.2	-0.1	+1.5
soil	soil sample 8; outgrowth in LB	+1.4	-0.1	+0.2	+0.1	-1.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1	-0.9	+0.5	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	-0.1	-0.4	+0.4	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+2.2	+0.0	+0.3	-0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-0.2	-0.3	-0.1	+2.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.4	+0.5	+0.7	+0.2	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.2	+0.2	+0.7	+0.4	+1.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.5	+0.3	+0.7	+0.3	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.6	+0.6	+0.5	+0.4	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	+0.6	+0.5	+0.4	+1.0
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	+0.3	+0.7	+0.4	+1.0
supernatant control	Vogels_fungal_media; pH 5.5	+0.7	+0.3	+0.8	+0.4	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.8	+0.5	+0.5	+0.4	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	+0.6	+0.7	+0.4	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.4	+0.7	+0.2	+1.3
seeds	Growth on radish seeds for 24 hours	+0.0	+1.1	+0.7	+0.3	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.7	+1.9	+0.3	+0.0	+0.6