Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08410	PS417_08415	PS417_08420	PS417_08425	PS417_08430
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	-2.8	-4.1	-0.4	-0.1
solid stress	Fraxetin 3 mM; solid stress	-2.2	-1.2	-1.4	-0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.8	-1.5	-0.0	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.7	-0.8	-0.3	-2.3
carbon source	octanoate (C)	-0.6	-0.4	-1.2	-0.3	-2.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	-1.1	-2.6	-0.5	-0.2
carbon source	octanoate (C)	-0.2	-0.7	-0.9	-0.3	-2.5
phage	P. simiae Grant Run MOI 0.1	-3.8	-0.1	-0.0	-0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	-1.7	-1.8	-0.6	-0.1
solid stress	Fraxetin 3 mM; solid stress	-0.4	-1.4	-1.5	-0.6	-0.2
liquid stress	Scopoletin 3 mM; liquid stress	-3.7	-0.0	+0.2	-0.4	-0.0
solid stress	Fraxetin 3 mM; solid stress	-0.9	-1.4	-0.9	-0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.6	-0.8	+0.1	-1.8
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-2.1	-0.3	-0.4	+0.2	-1.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.1	-0.4	-0.5	+0.3	-1.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-3.4	-0.1	+0.5	+0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-2.1	+0.9	-0.6	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.4	-0.1	-0.7	+1.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.9	+1.1	-0.2	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.5	+0.6	+0.9	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+1.0	+0.8	+0.4	-1.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	-1.6	-0.4	+0.4	+1.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.7	+1.0	+0.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.8	+1.2	+0.6	-0.7
stress	Gentamicin 0.008 mg/ml	-1.7	+1.0	+0.7	+1.1	+0.5
stress	Cisplatin 0.01 mg/ml	-1.2	+0.6	+1.0	+0.5	+0.9
root	root sample 6; outgrowth in LB	-0.4	-0.3	+0.5	+2.5	-0.0
ecofab	LB in EcoFAB_3.5mL	+0.1	+1.5	+1.6	+0.5	+0.1
nitrogen source	Adenine (N)	+0.3	+0.8	+1.1	+1.1	+0.6
carbon source	2'-Deoxyinosine 5 mM (C)	+0.7	+1.0	+1.4	+2.1	+0.7