Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08390	PS417_08395	PS417_08400	PS417_08405	PS417_08410
phage	P. simiae Grant Run MOI 0.1	+0.1	+0.0	N.D.	+0.0	-3.8
liquid stress	Scopoletin 3 mM; liquid stress	-0.0	+0.2	N.D.	-0.1	-3.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.3	N.D.	-0.6	-2.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	-0.1	N.D.	+0.1	-3.4
soil	soil sample 4; outgrowth in LB	-0.2	-0.2	N.D.	-0.4	-2.5
soil	soil sample 5; outgrowth in LB	-0.6	-0.3	N.D.	+0.2	-2.4
solid stress	Fraxetin 3 mM; solid stress	-0.0	-0.3	N.D.	-0.3	-2.2
liquid stress	80% Methanol 2 mM; liquid stress	-0.0	+0.0	N.D.	+0.1	-2.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	-0.4	N.D.	-0.0	-2.2
nophagecontrol	Only library	-0.3	-0.1	N.D.	-0.0	-2.3
motility	inner cut, LB soft agar motility assay	+0.3	+0.1	N.D.	-0.3	-2.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.0	N.D.	-0.2	-2.5
solid stress	Scopoletin 2 mM; solid stress	-0.1	-0.1	N.D.	-0.2	-2.1
liquid stress	Scopoletin 1 mM; liquid stress	-0.2	-0.1	N.D.	-0.0	-2.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-0.3	N.D.	+0.1	-2.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.2	N.D.	-0.2	-1.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	+0.0	N.D.	-0.0	-1.9
motility	outer cut, LB soft agar motility assay	-0.3	+0.1	N.D.	-0.2	-2.0
motility	outer cut, LB soft agar motility assay	+0.1	-0.0	N.D.	-0.2	-2.2
seeds	Growth on radish seeds for 72 hours	+0.2	-0.1	N.D.	-0.1	-2.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	+0.0	N.D.	-0.0	-2.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.0	-0.2	N.D.	+0.0	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	N.D.	-0.3	-1.6
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-0.3	N.D.	-0.1	-1.7
stress	Paraquat dichloride 0.008 mg/ml	+0.0	+0.2	N.D.	-0.1	-2.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.3	N.D.	+0.1	-2.2
stress	Paraquat dichloride 0.002 mg/ml	-0.4	+0.3	N.D.	+0.1	-1.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	+0.5	N.D.	-0.0	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.6	N.D.	+0.3	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.1	N.D.	-0.1	+1.8