Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_08385 and PS417_08390 are separated by 113 nucleotidesPS417_08390 and PS417_08395 are separated by 45 nucleotidesPS417_08395 and PS417_08400 overlap by 1 nucleotidesPS417_08400 and PS417_08405 are separated by 10 nucleotides PS417_08385: PS417_08385 - hypothetical protein, at 1,838,518 to 1,839,489 _08385 PS417_08390: PS417_08390 - transcription elongation factor GreB, at 1,839,603 to 1,840,076 _08390 PS417_08395: PS417_08395 - ABC transporter permease, at 1,840,122 to 1,842,632 _08395 PS417_08400: PS417_08400 - ABC transporter, at 1,842,632 to 1,843,315 _08400 PS417_08405: PS417_08405 - esterase, at 1,843,326 to 1,843,931 _08405
Group Condition PS417_08385 PS417_08390 PS417_08395 PS417_08400 PS417_08405
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -0.5 -0.3 N.D. -0.6
carbon source octanoate (C) -0.6 -0.3 +0.2 N.D. -0.2
carbon source L-Valine (C) -0.2 -0.5 -0.1 N.D. +0.3
carbon source Uridine (C) -0.4 -0.4 +0.3 N.D. -0.1
carbon source 2-Deoxy-D-Ribose (C) +0.2 -0.8 +0.2 N.D. +0.1
carbon source L-Valine (C) +0.3 -0.9 +0.3 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 +0.3 +0.3 N.D. -0.4
soil soil sample 4; outgrowth in LB +0.4 -0.2 -0.2 N.D. -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 +0.4 +0.1 N.D. -0.3
solid stress 80% Methanol 3 mM; solid stress +0.5 -0.3 -0.2 N.D. -0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.6 -0.3 -0.3 N.D. -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 +0.7 +0.1 N.D. -0.3
soil soil sample 5; outgrowth in LB +0.8 -0.6 -0.3 N.D. +0.2
rhizosphere rhizosphere sample 8; outgrowth in LB +0.8 -0.4 -0.0 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.3 -0.2 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.4 +0.4 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +0.2 -0.2 N.D. -0.4
rhizosphere rhizosphere sample 1; outgrowth in LB +0.9 -0.4 +0.1 N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 +0.2 +0.7 N.D. -0.3
root root sample 6; outgrowth in LB +0.9 -0.7 +0.4 N.D. +0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.6 +0.7 -0.0 N.D. -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.4 +0.6 -0.2 N.D. +0.3
phage JP1 MOI 10 +0.6 +0.4 +0.1 N.D. -0.0
phage P. simiae OR Antrim MOI 0.1 +0.8 +0.1 -0.3 N.D. +0.5
phage P. simiae OR Antrim MOI 1 +0.7 +0.2 +0.2 N.D. +0.2
stress Cobalt chloride 0.16 mM +0.3 +0.7 +0.2 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.5 +0.4 N.D. +0.2
phage P. simiae OR1 MOI 0.1 +0.5 +0.2 +0.3 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.4 +0.6 N.D. +0.3
stress Gentamicin 0.008 mg/ml +3.3 -0.1 -0.2 N.D. -0.1
remove
PS417_08385
plot		 remove
PS417_08390
plot		 remove
PS417_08395		 remove
PS417_08400
plot		 remove
PS417_08405
plot