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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1646 and GFF1647 overlap by 49 nucleotides
GFF1647 and GFF1648 are separated by 128 nucleotides
GFF1648 and GFF1649 are separated by 159 nucleotides
GFF1649 and GFF1650 are separated by 104 nucleotides
GFF1646 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,841 to 286,011
GFF1646
GFF1647 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,963 to 288,191
GFF1647
GFF1648 - Ligand-binding SRPBCC domain protein family, at 288,320 to 288,766
GFF1648
GFF1649 - hypothetical protein, at 288,926 to 289,591
GFF1649
GFF1650 - NmrA-like, at 289,696 to 290,781
GFF1650
Group
Condition
GFF1646
GFF1647
GFF1648
GFF1649
GFF1650
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.6
+0.4
-1.5
-0.4
complex community
Community=arabino-guar; Passage=4
-0.2
-0.2
+0.2
-1.4
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.5
-0.2
+0.2
-1.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
-0.2
-0.4
-0.6
-0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.3
-0.4
-0.3
-0.2
-0.2
complex community
Community=guar; Passage=4
-1.1
+0.2
+0.3
-0.5
-0.2
complex community
Community=Kojac gum; Passage=1
-0.0
-0.1
-0.2
-1.2
+0.1
complex community
Community=guar; Passage=4
-0.7
-0.1
+0.3
-1.0
+0.3
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.1
-0.3
-0.7
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.6
-1.5
+0.2
-0.1
phage
phage_bap4
-0.2
+0.1
-0.0
-0.6
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.2
-0.1
-0.5
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.2
-0.1
-0.8
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.1
-0.4
-0.3
-0.0
phage
phage_bap4
-0.1
-0.2
-0.2
-0.4
+0.0
no phage control
no phage control
-0.5
-0.1
+0.0
-0.3
+0.0
complex community
Community=guar; Passage=4
+0.1
-0.1
-0.4
-0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.4
+0.0
-0.3
-0.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.7
-0.0
-0.3
-1.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.0
+0.2
-0.4
-0.4
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.3
-0.6
-0.1
-0.2
phage
phage_bap4
+0.0
+0.2
-0.0
-0.8
+0.1
complex community
Community=guar; Passage=4
-0.0
+0.1
+0.2
-0.7
+0.2
no phage control
no phage control
-0.1
+0.0
+0.3
-0.4
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.6
+0.1
+0.1
+0.4
-0.1
complex community
Community=Locust bean gum; Passage=1
+0.0
+0.2
-0.5
+0.2
+0.1
phage
phage_bap4
-0.2
-0.1
+0.2
+0.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.1
-0.3
+0.5
-0.0
complex community
Community=Kojac gum; Passage=4
-0.1
+0.0
-0.2
+0.8
+0.3
complex community
Community=arabino-guar; Passage=4
+0.2
+0.1
+0.1
+1.2
+0.6
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