Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF1646 and GFF1647 overlap by 49 nucleotidesGFF1647 and GFF1648 are separated by 128 nucleotidesGFF1648 and GFF1649 are separated by 159 nucleotidesGFF1649 and GFF1650 are separated by 104 nucleotides GFF1646 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,841 to 286,011 GFF1646 GFF1647 - Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching, at 285,963 to 288,191 GFF1647 GFF1648 - Ligand-binding SRPBCC domain protein family, at 288,320 to 288,766 GFF1648 GFF1649 - hypothetical protein, at 288,926 to 289,591 GFF1649 GFF1650 - NmrA-like, at 289,696 to 290,781 GFF1650
Group Condition GFF1646 GFF1647 GFF1648 GFF1649 GFF1650
complex community Community=Locust bean gum; Passage=4 +0.1 -0.6 +0.4 -1.5 -0.4
complex community Community=arabino-guar; Passage=4 -0.2 -0.2 +0.2 -1.4 -0.2
complex community Community=Locust bean gum; Passage=4 -0.5 -0.2 +0.2 -1.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 -0.2 -0.4 -0.6 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.3 -0.4 -0.3 -0.2 -0.2
complex community Community=guar; Passage=4 -1.1 +0.2 +0.3 -0.5 -0.2
complex community Community=Kojac gum; Passage=1 -0.0 -0.1 -0.2 -1.2 +0.1
complex community Community=guar; Passage=4 -0.7 -0.1 +0.3 -1.0 +0.3
complex community Community=Locust bean gum; Passage=4 -0.0 -0.1 -0.3 -0.7 +0.0
complex community Community=Locust bean gum; Passage=4 -0.2 +0.6 -1.5 +0.2 -0.1
phage phage_bap4 -0.2 +0.1 -0.0 -0.6 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.2 -0.1 -0.5 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.2 -0.1 -0.8 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.1 -0.4 -0.3 -0.0
phage phage_bap4 -0.1 -0.2 -0.2 -0.4 +0.0
no phage control no phage control -0.5 -0.1 +0.0 -0.3 +0.0
complex community Community=guar; Passage=4 +0.1 -0.1 -0.4 -0.2 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 +0.0 -0.3 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.7 -0.0 -0.3 -1.2 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.2 -0.4 -0.4 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.3 -0.6 -0.1 -0.2
phage phage_bap4 +0.0 +0.2 -0.0 -0.8 +0.1
complex community Community=guar; Passage=4 -0.0 +0.1 +0.2 -0.7 +0.2
no phage control no phage control -0.1 +0.0 +0.3 -0.4 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.6 +0.1 +0.1 +0.4 -0.1
complex community Community=Locust bean gum; Passage=1 +0.0 +0.2 -0.5 +0.2 +0.1
phage phage_bap4 -0.2 -0.1 +0.2 +0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.0 +0.1 -0.3 +0.5 -0.0
complex community Community=Kojac gum; Passage=4 -0.1 +0.0 -0.2 +0.8 +0.3
complex community Community=arabino-guar; Passage=4 +0.2 +0.1 +0.1 +1.2 +0.6
remove
GFF1646
plot
remove
GFF1647
plot
remove
GFF1648
remove
GFF1649
plot
remove
GFF1650
plot