Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08365	PS417_08370	PS417_08375	PS417_08380	PS417_08385
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-3.0	-0.1	-0.1	-0.2	+0.1
carbon source	L-Valine (C)	-3.4	+0.0	+0.1	-0.2	+0.3
carbon source	octanoate (C)	-0.3	+0.1	-0.0	-2.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-0.2	-0.1	-0.5	-0.0
carbon source	octanoate (C)	-0.3	-0.0	+0.1	-2.0	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-3.0	-0.1	+0.1	-0.1	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.2	+0.2	+0.1	-0.2	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-3.4	-0.1	+0.2	+0.2	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.7	+0.1	-0.3	-0.4	+0.2
stress	R2A with Fusaric 120 ug/mL	-1.2	+0.0	+0.0	-1.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.3	-0.1	+0.1	+0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.9	-0.1	-0.0	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.3	-0.2	+0.5	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.8	+0.0	+0.1	-0.1	+0.6
phage	P. simiae OR Antrim MOI 10	-1.8	+0.0	-0.1	+0.6	+0.3
phage	P. simiae OR Antrim MOI 0.1	-1.3	-0.1	-0.3	+0.6	+0.8
liquid stress	Fraxetin 2 mM; liquid stress	-1.3	+0.2	-0.0	+0.5	+0.4
phage	P. simiae OR Antrim MOI 1	-1.7	+0.2	+0.1	+0.5	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2	+0.2	-0.1	+1.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.1	+0.1	+0.6	+0.8
phage	P. simiae Grant Run MOI 0.1	-0.5	-0.2	-0.2	+0.9	+0.8
phage	JP1 MOI 1	+1.1	-0.4	+0.2	+0.6	-0.1
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.3	-0.2	+0.0	+1.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	-0.1	-0.2	+0.4	+0.3
stress	Spectinomycin 0.4 mg/ml	+0.8	-0.1	-0.1	+1.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.5	+0.2	-0.1	+0.5	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+1.6	+0.1	-0.0	+0.6	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.2	+0.1	+0.0	+0.6	+0.1
stress	Neomycin 0.04 mg/ml	+0.0	+0.0	-0.1	+2.9	+0.9
stress	Gentamicin 0.008 mg/ml	-0.1	-0.0	-0.4	+8.6	+3.3