Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00815	PS417_00820	PS417_00825	PS417_00830	PS417_00835
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-0.3	-2.5	-0.1	+0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	+0.3	-0.3	-1.9	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-1.0	-0.7	-0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	+0.3	+0.1	-1.4	-0.3
phage	JP1 MOI 1	N.D.	+0.4	-1.2	-0.3	+0.3
motility	inner cut, LB soft agar motility assay	N.D.	+0.2	-1.3	+0.0	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	-0.7	+0.6	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-1.2	-0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.4	-1.0	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	+0.8	-0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.3	-1.1	+1.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	+0.2	+0.6	-0.9
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.0	+0.7	-0.8	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	+0.7	-0.6	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	+1.0	-0.7	+0.0
stress	methylglyoxal 0.032 vol%	N.D.	-0.3	+1.3	+0.2	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.4	+0.3	-0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.1	+1.1	-0.9	+0.5
seeds	Growth on radish seeds for 72 hours	N.D.	+0.2	-0.7	+0.7	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.5	+0.2	+0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.3	+0.5	+0.4	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.3	+0.6	+0.6	+0.5
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.2	+1.2	+0.2	+0.3
seeds	Growth on radish seeds for 24 hours	N.D.	-0.2	+0.0	+1.1	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.2	+0.4	+0.5	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	+0.3	+0.4	+0.6	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	+0.2	+0.8	+0.5	+0.5
soil	soil sample 5; outgrowth in LB	N.D.	+0.3	+1.2	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.2	+2.2	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.1	+0.7	+1.9	+0.3