Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08300	PS417_08305	PS417_08310	PS417_08315	PS417_08320
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	-0.0	-0.2	-3.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.4	-0.2	-0.3	-1.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	-0.3	-0.4	-0.4	-0.6
phage	P. simiae OR Antrim MOI 0.1	-0.0	-0.2	-0.7	+0.3	-1.3
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.2	-2.5	+0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	-0.1	+0.6	-1.8
motility	inner cut, LB soft agar motility assay	-0.0	-0.2	+0.1	-0.2	-1.5
solid stress	Fraxetin 3 mM; solid stress	-0.1	-0.0	-1.1	+0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	+0.4	+0.0	-2.1
phage	P. simiae OR Antrim MOI 10	-0.2	+0.5	-0.3	+0.4	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.1	+0.3	+0.6	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.8	-0.4	-0.4	-0.4
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.5	-1.8	+0.7	+0.1
phage	P. simiae ORA MOI 10	-0.2	-0.8	+0.5	+0.4	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.0	-0.2	-0.4	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.0	+0.3	-0.3	-0.8	+0.8
phage	JP1 MOI 10	+0.1	-0.3	+0.3	+0.7	-0.8
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.3	+0.4	+0.6	-0.3	-0.9
carbon source	L-Valine (C)	+0.1	-0.2	-0.7	-0.2	+1.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.3	-0.5	-0.3	+1.4
seeds	Growth on radish seeds for 72 hours	-0.3	-0.4	-0.1	+0.0	+1.2
soil	soil sample 4; outgrowth in LB	+0.2	+0.5	-0.5	+1.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.3	+0.4	+0.5	+0.9
seeds	Growth on radish seeds for 72 hours	-0.2	-0.1	-0.8	+0.3	+1.9
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	-0.1	+0.6	-0.4	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.5	-0.1	+0.6	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.4	+0.8	+0.2	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.2	+0.6	-0.1	+0.7
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.2	+0.2	+0.3	-0.1	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.2	+0.3	+0.1	+1.5