Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08265	PS417_08275	PS417_08285	PS417_08290	PS417_08295
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.5	-0.0	-0.2	-1.0
phage	Wcs_1	-0.2	-0.4	-0.0	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.1	+0.1	-0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.6	+0.2	+0.0	-0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.1	+0.3	-0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	+0.0	+0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.3	+0.5	-0.1	-0.8
seeds	Growth on radish seeds for 72 hours	+0.2	-0.6	+0.2	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.1	+0.2	+0.2	-0.6
liquid stress	80% Methanol 3 mM; liquid stress	+0.5	+0.2	-0.2	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.5	-0.4	+0.0	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.2	+0.2	-0.2	-0.5
solid stress	Fraxetin 2 mM; solid stress	+0.1	+0.2	+0.2	+0.3	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.2	+0.6	+0.1	-0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.1	+0.1	-0.6	+0.8
liquid stress	80% Methanol 2 mM; liquid stress	+0.5	+0.1	+0.1	+0.2	-0.6
seeds	Growth on radish seeds for 72 hours	+0.3	+0.3	+0.5	+0.0	-0.8
liquid stress	Scopoletin 2 mM; liquid stress	+0.4	+0.1	+0.2	+0.2	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.6	+0.2	-0.0	-0.6
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.4	+0.3	-0.0	-0.1	+0.7
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.1	+0.1	-0.1	-0.3	+0.8
phage	P. simiae Grant Run MOI 10	+0.2	+0.2	+0.5	+0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	-0.5	-0.1	-0.1	+1.3
phage	P. simiae ORA MOI 10	-0.3	+0.3	+0.1	-0.1	+0.8
phage	P. simiae OR Antrim MOI 0.1	-0.2	+0.7	+0.3	+0.4	-0.3
phage	JP1 MOI 0.1	+0.2	-0.1	+0.2	+0.3	+0.5
stress	Gentamicin 0.008 mg/ml	+0.1	-0.2	+0.5	+0.1	+0.7
solid stress	Fraxetin 3 mM; solid stress	+0.2	-0.2	+0.3	+0.5	+0.6
phage	JP1 MOI 1	+0.2	+0.4	+0.4	+0.2	+0.2
liquid stress	Fraxetin 2 mM; liquid stress	+0.6	+0.4	+0.0	-0.2	+0.7