Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08215 and PS417_08220 overlap by 4 nucleotidesPS417_08220 and PS417_08225 overlap by 1 nucleotidesPS417_08225 and PS417_08230 are separated by 3 nucleotidesPS417_08230 and PS417_08235 are separated by 24 nucleotides PS417_08215: PS417_08215 - flippase, at 1,799,291 to 1,800,601 _08215 PS417_08220: PS417_08220 - epimerase, at 1,800,598 to 1,801,530 _08220 PS417_08225: PS417_08225 - acetolactate synthase, at 1,801,530 to 1,803,245 _08225 PS417_08230: PS417_08230 - lipopolysaccharide biosynthesis protein RfbH, at 1,803,249 to 1,804,562 _08230 PS417_08235: PS417_08235 - CDP-glucose 4,6-dehydratase, at 1,804,587 to 1,805,672 _08235
Group Condition PS417_08215 PS417_08220 PS417_08225 PS417_08230 PS417_08235
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.5 -4.0 -5.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.4 -3.9 -5.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.6 -4.9 -4.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.4 -3.5 -5.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.3 -3.4 -5.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.5 -2.1 -5.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.6 -3.3 -4.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.6 -2.9 -4.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.6 -3.4 -3.6 N.D.
stress Polymyxin B sulfate 0.006 mg/ml N.D. -3.8 -3.6 -4.0 N.D.
soil soil sample 3; outgrowth in LB N.D. -1.9 -4.3 -4.9 N.D.
carbon source acetate (C) N.D. -4.2 -2.9 -2.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.5 -2.9 -1.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -5.0 -1.5 -2.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.9 -3.2 -3.3 N.D.
carbon source Gly-Glu (C) N.D. -1.4 -2.7 -4.2 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -3.1 -1.5 -3.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.5 -2.6 -1.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -4.4 -1.4 -2.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.6 -2.4 -2.5 N.D.
carbon source acetate (C) N.D. -3.0 -1.9 -2.6 N.D.
stress Benzalkonium Chloride 0.012 mg/ml N.D. -3.5 -2.1 -1.5 N.D.
nitrogen source Ammonium chloride (N) N.D. -2.9 -1.7 -2.4 N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. -2.9 -1.9 -2.0 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. +1.7 +2.3 +2.9 N.D.
stress Tetracycline 0.001 mg/ml N.D. +1.9 +2.6 +3.1 N.D.
phage Wcs_1 N.D. +3.5 +2.5 +3.3 N.D.
stress Gentamicin 0.008 mg/ml N.D. +3.2 +3.6 +4.4 N.D.
stress Neomycin 0.04 mg/ml N.D. +3.9 +4.7 +4.3 N.D.
stress Doxycycline hyclate 0.001 mg/ml N.D. +5.6 +5.7 +6.7 N.D.
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PS417_08215
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PS417_08220
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PS417_08230
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PS417_08235
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