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Cofit
Protein
Homologs
Fitness for 5 genes in
Hydrogenophaga sp. GW460-11-11-14-LB1
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF1611 and GFF1612 are separated by 5 nucleotides
GFF1612 and GFF1613 are separated by 4 nucleotides
GFF1613 and GFF1614 are separated by 21 nucleotides
GFF1614 and GFF1615 are separated by 7 nucleotides
GFF1611 - Glycine cleavage system transcriptional activator, at 465,005 to 466,033
GFF1611
GFF1612 - Membrane protein, putative, at 466,039 to 466,956
GFF1612
GFF1613 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 466,961 to 467,677
GFF1613
GFF1614 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 467,699 to 469,660
GFF1614
GFF1615 - NAD-dependent epimerase/dehydratase, at 469,668 to 470,621
GFF1615
Group
Condition
GFF1611
GFF1612
GFF1613
GFF1614
GFF1615
carbon source
Ying_OrganicAcid7 rep A; time point 3
-4.5
+0.1
-3.2
-0.0
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 3
-4.0
+0.1
-2.4
-0.2
N.D.
carbon source
Ying_OrganicAcid7 rep B; time point 3
-4.1
-0.1
-1.5
+0.1
N.D.
carbon source
Ying_Others16 rep A; time point 2
+0.3
+0.0
-5.3
-0.2
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 1
-1.6
-0.0
-3.5
-0.0
N.D.
carbon source
Ying_Nucleobase14 rep A; time point 1
+0.3
+0.1
-5.3
-0.2
N.D.
carbon source
Ying_OrganicAcid7 rep A; time point 2
-2.9
+0.0
-1.9
-0.1
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 2
-2.6
+0.1
-2.3
+0.0
N.D.
carbon source
Ying_OrganicAcid7 rep B; time point 2
-2.6
+0.1
-2.2
+0.0
N.D.
carbon source
Ying_Others16 rep B; time point 3
-0.2
+0.1
-4.0
-0.2
N.D.
carbon source
Ying_Nucleobase14 rep A; time point 2
+0.3
+0.2
-4.2
-0.2
N.D.
carbon source
Ying_Others16 rep C; time point 1
+0.0
+0.0
-3.7
-0.1
N.D.
carbon source
Ying_Others16 rep B; time point 2
+0.1
+0.1
-3.4
-0.1
N.D.
carbon source
Ying_Nucleobase14 rep C; time point 1
+0.1
+0.1
-3.4
-0.1
N.D.
carbon source
Ying_sugar7 rep C; time point 3
-0.2
+0.1
-2.9
-0.1
N.D.
carbon source
Ying_OrganicAcid7 rep A; time point 1
-1.6
-0.0
-1.2
-0.1
N.D.
carbon source
Ying_Others16 rep B; time point 1
-0.0
-0.1
-2.8
+0.1
N.D.
carbon source
Ying_sugar7 rep A; time point 1
-0.2
-0.0
-2.2
-0.2
N.D.
carbon source
Ying_sugar7 rep C; time point 1
-0.1
+0.1
-2.3
-0.2
N.D.
carbon source
Ying_OrganicAcid7 rep B; time point 1
-1.5
+0.1
-1.1
+0.0
N.D.
carbon source
Ying_Others16 rep C; time point 2
+0.1
+0.0
-2.4
-0.1
N.D.
carbon source
Ying_sugar7 rep B; time point 2
-0.3
+0.1
-1.8
-0.3
N.D.
carbon source
Ying_Nucleobase14 rep B; time point 2
+0.2
+0.2
-2.7
-0.1
N.D.
carbon source
Ying_Nucleobase14 rep C; time point 2
+0.2
+0.2
-2.7
-0.1
N.D.
carbon source
Ying_sugar7 rep A; time point 3
-0.2
-0.0
-1.7
-0.2
N.D.
carbon source
Ying_sugar7 rep A; time point 2
-0.1
+0.1
-1.9
-0.3
N.D.
carbon source
Ying_Others16 rep C; time point 3
-0.1
-0.1
-1.9
-0.0
N.D.
carbon source
Ying_Others16 rep A; time point 1
+0.1
-0.0
-2.1
+0.1
N.D.
carbon source
Ying_sugar7 rep B; time point 3
-0.1
+0.0
-2.0
+0.0
N.D.
carbon source
Ying_all64 rep C; time point 3
-0.5
+0.4
+1.1
+0.3
N.D.
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