Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08145	PS417_08150	PS417_08155	PS417_08160	PS417_08165
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	-5.2	-0.0	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-5.1	-0.1	-1.2
soil	soil sample 3; outgrowth in LB	N.D.	-0.4	-4.0	-0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	-5.1	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	-4.9	+0.4	-0.5
carbon source	2-Deoxy-D-Ribose 10 mM (C)	N.D.	+0.5	-4.8	-0.6	-0.5
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.3	-4.6	-0.1	-0.7
carbon source	Carbon source D-Mannitol 5 mM	N.D.	+0.7	-5.1	-0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.6	-3.7	+0.3	-0.8
carbon source	Carbon source D-Mannitol 2.5 mM	N.D.	+0.2	-5.0	-0.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-4.3	-0.0	+0.3
seeds	Growth on radish seeds for 72 hours	N.D.	-2.3	-2.2	+0.6	-0.0
solid stress	Fraxetin 3 mM; solid stress	N.D.	+1.0	-4.5	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.4	-4.8	+0.6	+0.1
carbon source	L-Valine (C)	N.D.	-0.5	-3.1	+0.6	-0.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	+0.8	-4.4	+0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.2	-1.1	-1.9	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.8	-4.9	+1.6	-0.3
solid stress	Fraxetin 3 mM; solid stress	N.D.	+1.1	-3.2	-0.0	-0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.4	-3.3	+0.3	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+1.2	-4.0	+1.1	+1.1
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.7	-2.0	+1.2	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-1.0	+4.4	+0.4	+0.5
phage	Wcs_0.1	N.D.	+1.4	-0.1	+1.3	+1.8
stress	Tetracycline 0.001 mg/ml	N.D.	+1.2	+1.2	+1.1	+2.1
phage	P. simiae OR1 MOI 0.1	N.D.	+1.2	+1.0	+1.5	+2.0
phage	Wcs_1	N.D.	+2.7	+1.2	+2.5	+3.3
stress	Neomycin 0.04 mg/ml	N.D.	+1.1	+3.3	+2.2	+4.4
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+1.5	+3.5	+2.3	+4.3
stress	Gentamicin 0.008 mg/ml	N.D.	+1.6	+6.8	+2.3	+3.7