Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08130 and PS417_08135 are separated by 28 nucleotidesPS417_08135 and PS417_08140 overlap by 4 nucleotidesPS417_08140 and PS417_08145 are separated by 120 nucleotidesPS417_08145 and PS417_08150 are separated by 162 nucleotides PS417_08130: PS417_08130 - aspartate aminotransferase, at 1,780,167 to 1,781,279 _08130 PS417_08135: PS417_08135 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,781,308 to 1,783,518 _08135 PS417_08140: PS417_08140 - cytidylate kinase, at 1,783,515 to 1,784,204 _08140 PS417_08145: PS417_08145 - 30S ribosomal protein S1, at 1,784,325 to 1,786,010 _08145 PS417_08150: PS417_08150 - hypothetical protein, at 1,786,173 to 1,786,457 _08150
Group Condition PS417_08130 PS417_08135 PS417_08140 PS417_08145 PS417_08150
soil soil sample 3; outgrowth in LB -2.1 -3.6 N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.8 -2.5 N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 -2.8 N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -5.0 N.D. N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.5 -4.2 N.D. N.D. -0.1
soil soil sample 5; outgrowth in LB -0.9 -4.2 N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.8 -3.0 N.D. N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -4.2 N.D. N.D. -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB -2.0 -3.9 N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.2 -3.7 N.D. N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.4 -3.2 N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 -3.3 N.D. N.D. +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -3.4 N.D. N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.3 -2.1 N.D. N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.0 -2.6 N.D. N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -3.3 N.D. N.D. -0.1
seeds Growth on radish seeds for 72 hours +0.2 -2.4 N.D. N.D. -2.3
rhizosphere rhizosphere sample 2; outgrowth in LB -1.0 -3.0 N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -4.6 N.D. N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.3 -2.8 N.D. N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -2.3 -1.8 N.D. N.D. -0.2
soil soil sample 8; outgrowth in LB -0.6 -3.7 N.D. N.D. -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -1.0 -2.9 N.D. N.D. -0.4
motility inner cut, LB soft agar motility assay -0.8 -2.7 N.D. N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.1 -2.0 N.D. N.D. +0.2
soil soil sample 6; outgrowth in LB -0.8 -3.5 N.D. N.D. +0.4
rhizosphere rhizosphere sample 8; outgrowth in LB -1.0 -3.0 N.D. N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -3.5 N.D. N.D. +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -3.3 N.D. N.D. +0.8
stress Doxycycline hyclate 0.001 mg/ml +1.8 +1.6 N.D. N.D. +1.5
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