Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08120 and PS417_08125 overlap by 1 nucleotidesPS417_08125 and PS417_08130 are separated by 9 nucleotidesPS417_08130 and PS417_08135 are separated by 28 nucleotidesPS417_08135 and PS417_08140 overlap by 4 nucleotides PS417_08120: PS417_08120 - MFS transporter, at 1,777,978 to 1,779,063 _08120 PS417_08125: PS417_08125 - prephenate dehydratase, at 1,779,063 to 1,780,157 _08125 PS417_08130: PS417_08130 - aspartate aminotransferase, at 1,780,167 to 1,781,279 _08130 PS417_08135: PS417_08135 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,781,308 to 1,783,518 _08135 PS417_08140: PS417_08140 - cytidylate kinase, at 1,783,515 to 1,784,204 _08140
Group Condition PS417_08120 PS417_08125 PS417_08130 PS417_08135 PS417_08140
soil soil sample 3; outgrowth in LB N.D. -3.1 -2.1 -3.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -0.9 -5.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.9 -1.5 -4.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.8 -2.8 -3.0 N.D.
soil soil sample 5; outgrowth in LB N.D. -3.2 -0.9 -4.2 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -2.3 -2.0 -3.9 N.D.
motility inner cut, LB soft agar motility assay N.D. -4.7 -0.8 -2.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -2.8 -2.5 N.D.
motility outer cut, LB soft agar motility assay N.D. -4.8 -0.3 -3.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.9 -2.3 -2.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -0.9 -4.2 N.D.
nitrogen source Inosine (N) N.D. -5.6 -0.8 -1.4 N.D.
carbon source octanoate (C) N.D. -5.3 -0.5 -1.8 N.D.
soil soil sample 8; outgrowth in LB N.D. -3.3 -0.6 -3.7 N.D.
soil soil sample 6; outgrowth in LB N.D. -3.3 -0.8 -3.5 N.D.
carbon source L-Citrulline (C) N.D. -5.6 -1.1 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.9 -1.1 -3.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.8 -1.4 -3.2 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -5.5 -0.2 -1.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.7 -2.0 -2.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -1.0 -3.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -1.2 -3.3 N.D.
motility inner cut, LB soft agar motility assay N.D. -4.6 -0.1 -2.5 N.D.
motility outer cut, LB soft agar motility assay N.D. -3.5 -0.4 -3.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.7 -2.3 -2.1 N.D.
soil soil sample 2; outgrowth in LB N.D. -3.3 -0.3 -3.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -1.2 -2.2 -3.7 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x N.D. -5.4 -0.3 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.8 -1.3 -2.8 N.D.
stress Doxycycline hyclate 0.001 mg/ml N.D. +4.7 +1.8 +1.6 N.D.
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