Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_08090 and PS417_08095 are separated by 177 nucleotidesPS417_08095 and PS417_08100 are separated by 4 nucleotidesPS417_08100 and PS417_08105 are separated by 64 nucleotidesPS417_08105 and PS417_08110 are separated by 108 nucleotides PS417_08090: PS417_08090 - 3-oxoacyl-ACP reductase, at 1,769,782 to 1,770,522 _08090 PS417_08095: PS417_08095 - phosphoglycolate phosphatase, at 1,770,700 to 1,771,371 _08095 PS417_08100: PS417_08100 - 3-demethylubiquinone-9 3-methyltransferase, at 1,771,376 to 1,772,074 _08100 PS417_08105: PS417_08105 - N-ethylammeline chlorohydrolase, at 1,772,139 to 1,773,470 _08105 PS417_08110: PS417_08110 - methylthioribose-1-phosphate isomerase, at 1,773,579 to 1,774,655 _08110
Group Condition PS417_08090 PS417_08095 PS417_08100 PS417_08105 PS417_08110
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.7 N.D. N.D. -1.9 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.2 N.D. N.D. -2.0 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.9 N.D. N.D. -0.6 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.9 N.D. N.D. -0.4 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.9 N.D. N.D. -1.9 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.8 N.D. N.D. -0.7 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.9 N.D. N.D. -0.8 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.9 N.D. N.D. -0.6 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.8 N.D. N.D. -0.3 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.8 N.D. N.D. -0.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.0 N.D. N.D. -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.9 N.D. N.D. -0.5 -0.0
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -2.2 N.D. N.D. -1.0 -0.1
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM -2.6 N.D. N.D. -0.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.2 N.D. N.D. -0.8 -0.1
phage P. simiae OR Antrim MOI 10 -2.7 N.D. N.D. +0.0 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.8 N.D. N.D. -0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.8 N.D. N.D. -0.4 +0.1
liquid stress Scopoletin 1 mM; liquid stress -2.5 N.D. N.D. -0.4 -0.2
solid stress Scopoletin 0.5 mM; solid stress -2.5 N.D. N.D. -0.5 -0.0
solid stress 80% Methanol 2 mM; solid stress -2.5 N.D. N.D. -0.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.2 N.D. N.D. -0.5 +0.0
solid stress Fraxetin 3 mM; solid stress -2.6 N.D. N.D. -0.3 +0.2
carbon source Carbon source D-Mannitol 2.5 mM -2.3 N.D. N.D. +0.1 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -2.6 N.D. N.D. -0.0 +0.1
phage P. simiae OR Antrim MOI 1 -2.7 N.D. N.D. +0.1 +0.2
stress Nalidixic 0.015 mg/ml -2.6 N.D. N.D. -0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.2 N.D. N.D. -0.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. N.D. -2.1 -0.4
soil soil sample 3; outgrowth in LB +1.4 N.D. N.D. -0.9 -0.4
remove
PS417_08090
plot		 remove
PS417_08095
plot		 remove
PS417_08100		 remove
PS417_08105
plot		 remove
PS417_08110
plot