Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_08075 and PS417_08080 overlap by 4 nucleotidesPS417_08080 and PS417_08085 are separated by 32 nucleotidesPS417_08085 and PS417_08090 are separated by 137 nucleotidesPS417_08090 and PS417_08095 are separated by 177 nucleotides PS417_08075: PS417_08075 - methionine ABC transporter ATP-binding protein, at 1,766,173 to 1,767,129 _08075 PS417_08080: PS417_08080 - ABC transporter ATP-binding protein, at 1,767,126 to 1,768,097 _08080 PS417_08085: PS417_08085 - diguanylate cyclase, at 1,768,130 to 1,769,644 _08085 PS417_08090: PS417_08090 - 3-oxoacyl-ACP reductase, at 1,769,782 to 1,770,522 _08090 PS417_08095: PS417_08095 - phosphoglycolate phosphatase, at 1,770,700 to 1,771,371 _08095
Group Condition PS417_08075 PS417_08080 PS417_08085 PS417_08090 PS417_08095
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.0 -0.2 -3.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 -0.0 -0.1 -2.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.3 -0.1 -2.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.0 -0.5 -2.9 N.D.
phage P. simiae OR Antrim MOI 1 -0.4 -0.0 -0.1 -2.7 N.D.
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM -0.2 -0.2 -0.2 -2.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.0 -0.2 -2.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.2 -0.3 -2.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.0 +0.0 -2.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.2 +0.1 -2.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 +0.1 +0.0 -2.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 +0.3 -0.1 -2.9 N.D.
solid stress 80% Methanol 2 mM; solid stress -0.2 -0.0 -0.0 -2.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 +0.0 +0.1 -2.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.4 -0.4 -2.9 N.D.
phage P. simiae OR Antrim MOI 10 -0.3 +0.2 +0.1 -2.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 -0.4 +0.0 -2.2 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 +0.3 -0.1 -2.6 N.D.
solid stress Fraxetin 3 mM; solid stress +0.2 -0.1 +0.1 -2.6 N.D.
solid stress Scopoletin 0.5 mM; solid stress +0.1 +0.1 -0.1 -2.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.1 -0.2 -2.2 N.D.
stress Nalidixic 0.015 mg/ml +0.3 +0.1 -0.0 -2.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.3 +0.2 +0.3 -2.2 N.D.
liquid stress Scopoletin 3 mM; liquid stress +0.0 +0.2 +0.1 -2.3 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.0 +0.2 +0.3 -2.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.0 +0.3 -2.2 N.D.
soil soil sample 4; outgrowth in LB +0.1 +0.2 +0.5 -2.1 N.D.
phage P. simiae ORA MOI 0.1 -0.1 -0.3 -0.2 +2.0 N.D.
soil soil sample 3; outgrowth in LB -0.3 +0.4 +0.5 +1.4 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 -0.2 +0.9 +1.1 N.D.
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