Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_08050	PS417_08055	PS417_08060	PS417_08065	PS417_08070
stress	methylglyoxal 0.032 vol%	-1.1	-0.1	-0.3	-0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.2	-0.2	-0.9	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	-0.2	+0.4	-0.1	-0.3
phage	P. simiae OR1 MOI 0.1	+0.2	-0.0	-0.6	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.2	-0.1	+0.8	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.2	+0.4	-0.1	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.6	+0.1	+0.4	-0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.2	+0.6	-0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.1	+0.6	-0.5	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.6	-0.4	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0	+0.2	+0.6	-0.2	-0.0
carbon source	L-Valine (C)	-0.4	+0.0	-0.4	+0.5	-0.1
soil	soil sample 4; outgrowth in LB	-0.8	+0.2	+0.5	-0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.1	+0.4	-0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	+0.3	-0.1	+0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.7	+0.4	+0.2	+0.1	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.2	+0.3	+0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.2	+0.2	-0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	+0.6	-0.1	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.1	-0.1	-0.4	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.0	+0.5	-0.4	+0.5
carbon source	L-Valine (C)	-0.4	+0.5	-0.1	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.3	+0.8	+0.1	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.3	-0.3	+0.3	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.3	+0.1	+0.6	+0.4
soil	soil sample 2; outgrowth in LB	+0.6	+0.0	+0.4	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.2	-0.1	-0.1	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-0.1	+0.0	+0.7	+0.1
phage	P. simiae Grant Run MOI 10	+0.6	+0.2	+0.5	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	-0.0	+1.3	+0.6	+0.0