Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_08010	PS417_08015	PS417_08020	PS417_08025	PS417_08030
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.6	+0.3	-5.3	+0.2
nitrogen source	Adenine (N)	-0.2	-0.5	-0.1	-0.3	-3.8
carbon source	Carbon source D-Mannitol 2.5 mM	-0.2	-0.2	-0.0	-3.9	-0.3
phage	P. simiae OR Antrim MOI 1	+0.0	+0.2	-0.2	-4.4	-0.2
phage	P. simiae Grant Run MOI 10	+0.3	+0.1	-0.0	-4.5	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.5	-0.1	-3.4	+0.2
solid stress	Scopoletin 0.5 mM; solid stress	-0.0	-0.2	+0.0	-3.1	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.1	-0.1	-3.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-0.2	-0.1	-2.7	+0.0
seeds	Growth on radish seeds for 72 hours	-0.3	-1.1	-0.4	-0.8	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.1	-0.1	-2.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.7	+0.5	-3.7	-0.1
solid stress	Scopoletin 3 mM; solid stress	-0.1	+0.1	+0.1	-2.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-0.1	-1.9	-0.6
stress	Dimethyl Sulfoxide 5 vol%	+0.1	+0.4	-0.4	-2.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.6	-0.0	-1.9	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	-0.0	-2.5	+0.0
phage	P. simiae OR1 MOI 0.1	-0.1	+0.6	+0.1	-2.2	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.2	+0.1	-2.5	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	+0.5	+0.0	-1.8	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.8	+0.1	-2.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.4	-0.4	-2.4	+1.0
soil	soil sample 5; outgrowth in LB	+0.1	-0.1	+0.5	-2.6	+0.9
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.4	+0.3	-2.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.0	-0.1	-1.5	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.3	+0.5	-1.5	+0.5
phage	JP1 MOI 1	+0.1	-0.4	-0.2	+1.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.6	+0.1	+1.5	+0.3
phage	JP1 MOI 10	+0.1	+0.3	+0.2	+1.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.1	+0.2	+0.6	+1.4