Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_07985 and PS417_07990 are separated by 154 nucleotidesPS417_07990 and PS417_07995 are separated by 1 nucleotidesPS417_07995 and PS417_08000 are separated by 150 nucleotidesPS417_08000 and PS417_08005 are separated by 309 nucleotides PS417_07985: PS417_07985 - AbrB family transcriptional regulator, at 1,747,520 to 1,747,777 _07985 PS417_07990: PS417_07990 - endoribonuclease L-PSP, at 1,747,932 to 1,748,324 _07990 PS417_07995: PS417_07995 - LOG family protein, at 1,748,326 to 1,749,699 _07995 PS417_08000: PS417_08000 - beta-hydroxylase, at 1,749,850 to 1,750,674 _08000 PS417_08005: PS417_08005 - trans-2-enoyl-CoA reductase, at 1,750,984 to 1,752,177 _08005
Group Condition PS417_07985 PS417_07990 PS417_07995 PS417_08000 PS417_08005
carbon source L-Valine (C) -0.7 -0.5 -1.0 -0.3 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.7 +0.5 -0.0 -1.1 N.D.
soil soil sample 3; outgrowth in LB -1.8 -0.2 -0.2 -0.0 N.D.
carbon source Ethanol (C) -1.3 -0.1 -0.8 +0.0 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.0 +0.0 -0.0 -1.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -1.4 -0.4 -0.2 -0.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 +0.4 -0.4 -1.2 N.D.
soil soil sample 8; outgrowth in LB -1.6 +0.3 -0.4 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 +0.2 -0.4 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.2 -0.5 +0.4 -0.3 N.D.
carbon source L-Valine (C) +0.2 -0.5 -1.3 +0.1 N.D.
phage P. simiae OR Antrim MOI 0.1 -1.3 -0.3 +0.5 -0.1 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.2 +0.5 +0.3 -1.4 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.1 +0.5 -1.1 +0.1 N.D.
phage P. simiae ORA MOI 10 -1.1 +0.2 +0.2 +0.4 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.6 +0.4 -0.1 -1.2 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 -0.2 +0.6 -1.3 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +0.4 +0.3 -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.8 -0.3 +0.3 N.D.
stress Doxycycline hyclate 0.001 mg/ml -0.9 +0.6 +0.1 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.4 -0.5 +0.7 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.9 +0.4 -0.8 -0.1 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.7 +0.7 -0.9 +0.0 N.D.
phage JP1 MOI 10 -0.3 +0.9 +0.4 -0.5 N.D.
stress methylglyoxal 0.032 vol% +0.5 -0.6 +0.4 +0.4 N.D.
phage JP1 MOI 0.1 +1.4 +0.6 -0.5 -0.1 N.D.
motility inner cut, LB soft agar motility assay +1.5 +0.0 +0.2 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +0.4 +0.1 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.3 +0.3 +0.4 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +4.0 +0.3 +0.3 -0.0 N.D.
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