Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF155 and GFF156 are separated by 16 nucleotidesGFF156 and GFF157 overlap by 4 nucleotidesGFF157 and GFF158 overlap by 4 nucleotidesGFF158 and GFF159 overlap by 13 nucleotides GFF155 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 183,212 to 184,783 GFF155 GFF156 - Glycosyl transferase, group 2 family, at 184,800 to 185,498 GFF156 GFF157 - Methyltransferase type 12, at 185,495 to 186,100 GFF157 GFF158 - LmbE-like protein, at 186,097 to 186,858 GFF158 GFF159 - Acyl-CoA dehydrogenase/oxidase domain protein, at 186,846 to 187,865 GFF159
Group Condition GFF155 GFF156 GFF157 GFF158 GFF159
complex community Community=arabino-guar; Passage=4 -0.0 -0.8 -1.2 N.D. -1.5
complex community Community=Kojac gum; Passage=4 -0.1 -3.0 -0.6 N.D. +0.4
complex community Community=guar; Passage=4 +0.0 +0.3 -1.0 N.D. -2.1
complex community Community=guar; Passage=4 +0.1 -0.7 -0.6 N.D. -1.5
phage phage_bap4 +0.1 -0.8 -0.4 N.D. -0.4
phage phage_bap4 +0.0 -1.1 +0.1 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 -0.2 -0.1 +0.2 N.D. -1.0
complex community Community=Locust bean gum; Passage=4 -0.3 -1.1 +0.0 N.D. +0.4
complex community Community=arabino-guar; Passage=4 -0.2 -0.1 -0.2 N.D. -0.3
no phage control no phage control -0.1 -0.5 -0.0 N.D. -0.1
no phage control no phage control +0.1 -0.2 -0.5 N.D. -0.1
complex community Community=guar; Passage=4 -0.1 +0.5 +0.0 N.D. -1.0
complex community Community=Locust bean gum; Passage=4 -0.1 -0.9 +0.4 N.D. +0.0
no phage control no phage control +0.1 -0.6 +0.3 N.D. -0.4
complex community Community=Kojac gum; Passage=1 +0.0 +0.2 -0.4 N.D. -0.2
complex community Community=guar; Passage=4 -0.0 +0.7 -1.1 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.0 -0.1 +0.3 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.0 +0.4 -0.0 N.D. -0.5
complex community Community=Locust bean gum; Passage=4 -0.1 -0.1 +0.5 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.5 +0.1 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 +0.1 -0.1 N.D. +0.7
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.2 +0.4 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 +0.4 +0.2 N.D. -0.0
vitamin M9 with Supernatant from Cyptococcus +0.3 +0.3 -0.0 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 +0.5 -0.0 N.D. +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 +0.3 +0.4 N.D. +0.2
vitamin M9 with Supernatant from Cyptococcus -0.0 +0.6 +0.3 N.D. +0.2
complex community Community=arabino-guar; Passage=4 +0.1 +0.2 +0.2 N.D. +0.6
complex community Community=arabino-guar; Passage=4 +0.2 +0.6 +0.6 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.5 +0.1 N.D. +0.5
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