Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07975	PS417_07980	PS417_07985	PS417_07990	PS417_07995
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.4	-1.4	-0.4	-0.2
carbon source	Ethanol (C)	N.D.	-0.0	-1.3	-0.1	-0.8
soil	soil sample 3; outgrowth in LB	N.D.	+0.1	-1.8	-0.2	-0.2
carbon source	L-Valine (C)	N.D.	+0.2	-0.7	-0.5	-1.0
soil	soil sample 8; outgrowth in LB	N.D.	-0.2	-1.6	+0.3	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.3	-1.7	+0.5	-0.0
carbon source	Carbon source L-Citrulline 5 mM	N.D.	-0.6	-0.2	+0.4	-0.8
carbon source	L-Valine (C)	N.D.	+0.3	+0.2	-0.5	-1.3
stress	1-ethyl-3-methylimidazolium acetate 35 mM	N.D.	+0.2	-0.8	+0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.2	-1.2	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	-1.1	+0.2	-0.4
phage	P. simiae OR Antrim MOI 0.1	N.D.	+0.3	-1.3	-0.3	+0.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	+0.1	-0.1	+0.5	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.7	+0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.5	-1.1	+0.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	+0.5	+0.3	-0.2
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+0.4	-0.9	+0.6	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.0	+0.7	+0.7	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.5	+0.6	-0.2	+0.6
phage	JP1 MOI 1	N.D.	-0.4	+1.3	-0.2	-0.0
stress	methylglyoxal 0.032 vol%	N.D.	+0.4	+0.5	-0.6	+0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+0.2	+0.9	+0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.0	+0.3	-0.4	+0.3
phage	JP1 MOI 0.1	N.D.	-0.4	+1.4	+0.6	-0.5
solid stress	80% Methanol 1 mM; solid stress	N.D.	+0.5	+1.0	-0.3	+0.2
motility	inner cut, LB soft agar motility assay	N.D.	-0.2	+1.5	+0.0	+0.2
seeds	Growth on radish seeds for 24 hours	N.D.	+0.3	+0.8	+0.7	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+1.3	+0.3	+0.4
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	N.D.	+0.6	+0.8	+0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.2	+4.0	+0.3	+0.3