Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07965	PS417_07970	PS417_07975	PS417_07980	PS417_07985
agar plate interaction control	Taped volatile agar plate with no fungus	-0.0	-0.1	N.D.	-0.4	-1.4
soil	soil sample 8; outgrowth in LB	-0.0	-0.0	N.D.	-0.2	-1.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.1	N.D.	-0.3	-1.7
soil	soil sample 3; outgrowth in LB	+0.1	+0.0	N.D.	+0.1	-1.8
phage	P. simiae ORA MOI 10	-0.3	-0.2	N.D.	-0.0	-1.1
carbon source	Ethanol (C)	-0.0	-0.1	N.D.	-0.0	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.2	N.D.	+0.1	-1.4
stress	Chloramphenicol 0.0075 mg/ml	-0.1	-0.1	N.D.	+0.1	-1.2
phage	P. simiae OR Antrim MOI 0.1	-0.2	+0.1	N.D.	+0.3	-1.3
phage	P. simiae ORA MOI 0.1	-0.0	-0.2	N.D.	+0.2	-1.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.2	+0.0	N.D.	-0.6	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.3	N.D.	-0.6	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.1	N.D.	+0.2	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.2	N.D.	-0.5	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	+0.1	N.D.	+0.5	-1.1
stress	Doxycycline hyclate 0.001 mg/ml	-0.1	+0.1	N.D.	+0.4	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.2	N.D.	-0.8	+0.5
phage	P. simiae Grant Run MOI 0.1	-0.1	-0.1	N.D.	-0.4	+0.8
no phage control	Time6-nophage	-0.2	+0.0	N.D.	-0.3	+1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.1	N.D.	+1.0	+0.3
phage	JP1 MOI 1	+0.1	-0.0	N.D.	-0.4	+1.3
seeds	Growth on radish seeds for 24 hours	+0.1	-0.3	N.D.	+0.3	+0.8
phage	JP1 MOI 0.1	+0.5	-0.0	N.D.	-0.4	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.0	N.D.	-0.0	+1.1
stress	Benzalkonium Chloride 0.012 mg/ml	+0.2	-0.0	N.D.	+0.1	+1.1
solid stress	80% Methanol 1 mM; solid stress	+0.1	-0.0	N.D.	+0.5	+1.0
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.2	-0.0	N.D.	+0.6	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	N.D.	+0.1	+1.3
motility	inner cut, LB soft agar motility assay	+0.2	+0.1	N.D.	-0.2	+1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.3	N.D.	+0.2	+4.0