Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07940	PS417_07945	PS417_07950	PS417_07955	PS417_07960
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-3.1	-0.7	+0.4	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.8	-0.9	-0.9	+0.2	-0.1
liquid stress	Scopoletin 3 mM; liquid stress	-0.6	-0.5	-1.0	-0.1	+0.0
carbon source	L-Histidine (C)	-0.8	-0.7	-0.5	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.9	-0.8	+0.0	+0.1
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.5	+0.2	-1.2	-0.0
solid stress	Fraxetin 3 mM; solid stress	-0.8	+0.3	-0.1	-1.0	-0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	-1.4	-0.5	-0.1	+0.4
stress	Gentamicin 0.008 mg/ml	-1.2	+0.2	+0.3	-0.9	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	-0.5	+0.2	-0.6	+0.2
phage	JP1 MOI 1	+0.5	-0.7	-0.5	-0.6	-0.0
phage	Wcs_1	-1.7	+0.2	+0.1	+0.3	-0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.8	-0.5	-0.3	+0.0	+0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.9	+0.1	-0.2	+0.4
phage	P. simiae OR Antrim MOI 1	+0.8	-0.7	-0.5	-0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.3	+0.4	-0.5	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-1.0	+0.2	-0.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.6	-1.5	+0.1	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	+0.8	-1.3	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.6	-0.8	-0.2	-0.2
phage	P. simiae OR Antrim MOI 10	+1.5	-0.5	-0.7	-0.2	+0.0
root	root sample 6; outgrowth in LB	-0.6	-0.5	+0.8	+0.4	-0.1
stress	Phosphomycin 0.003 mg/ml	+0.9	-0.2	-0.8	+0.3	+0.2
phage	JP1 MOI 1	-0.2	-0.5	+1.1	-0.3	+0.3
seeds	Growth on radish seeds for 72 hours	+0.5	-1.1	+0.8	+0.1	+0.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	+1.2	-0.7	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9	-0.4	+0.7	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.6	+0.4	+0.1	+0.4
stress	Cisplatin 0.01 mg/ml	+1.0	+0.1	-0.2	+0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.5	+0.7	+0.3	-0.1	-0.0