Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_07910	PS417_07915	PS417_07920	PS417_07930	PS417_07935
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-0.6	-0.3	N.D.
carbon source	L-Valine (C)	+0.2	+0.2	-0.6	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.1	-0.6	+0.2	N.D.
stress	methylglyoxal 0.032 vol%	-0.0	+0.2	-0.5	+0.1	N.D.
soil	soil sample 5; outgrowth in LB	+0.1	+0.3	-0.6	+0.1	N.D.
phage	P. simiae OR Antrim MOI 1	-0.3	+0.4	-0.3	+0.1	N.D.
supernatant control	Vogels_fungal_media 0.1X	+0.4	+0.1	-0.3	-0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-0.0	-0.3	+0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.4	-0.2	+0.1	N.D.
phage	JP1 MOI 10	+0.0	+0.3	-0.3	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	+0.4	-0.3	+0.1	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+0.1	-0.3	+0.1	N.D.
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.1	+0.4	-0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.2	-0.2	+0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.3	+0.1	-0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.2	+0.5	+0.1	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.1	+0.6	+0.0	N.D.
no stress control on plate	growth on LB_noSalt plate	+0.2	+0.3	+0.1	+0.2	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	+0.5	+0.1	+0.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.0	+0.6	-0.0	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.2	+0.3	+0.1	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.1	+0.3	+0.1	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	+0.1	+0.3	+0.1	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	+0.3	+0.2	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+0.1	+0.3	+0.1	N.D.
motility	inner cut, LB soft agar motility assay	+0.3	+0.1	+0.5	+0.2	N.D.
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.3	+0.2	+0.2	+0.3	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.3	+0.6	-0.0	N.D.
motility	inner cut, LB soft agar motility assay	+0.2	+0.2	+0.7	+0.1	N.D.
stress	LB_noSalt with Chloride 1100 mM	+0.5	+0.4	+0.6	+0.3	N.D.