Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1542 and GFF1543 are separated by 3 nucleotidesGFF1543 and GFF1544 are separated by 2 nucleotidesGFF1544 and GFF1545 are separated by 2 nucleotidesGFF1545 and GFF1546 are separated by 146 nucleotides GFF1542 - Anti-sigma B factor RsbT / Phosphoserine phosphatase RsbX (EC 3.1.3.3), at 139,176 to 140,171 GFF1542 GFF1543 - Putative SigmaB asociated two-component system sensor protein, at 140,175 to 141,053 GFF1543 GFF1544 - Two-component system sensor histidine kinase/response regulator hybrid, at 141,056 to 143,044 GFF1544 GFF1545 - Pyruvate dehydrogenase (quinone) (EC 1.2.5.1), at 143,047 to 144,765 GFF1545 GFF1546 - Tripartite tricarboxylate transporter TctA family, at 144,912 to 146,411 GFF1546
Group Condition GFF1542 GFF1543 GFF1544 GFF1545 GFF1546
complex community Community=arabino-guar; Passage=4 -4.1 -0.0 +0.0 -0.1 -1.0
complex community Community=arabino-guar; Passage=4 -5.9 +0.8 +0.3 +0.2 +0.3
complex community Community=guar; Passage=4 -2.3 +0.5 -0.2 -0.3 -0.4
complex community Community=arabino-guar; Passage=4 -1.1 +0.1 -0.1 -0.6 -0.6
complex community Community=arabino-guar; Passage=4 -1.3 -1.4 +0.1 +0.4 +0.2
complex community Community=Kojac gum; Passage=4 +0.0 -1.2 -0.4 +0.4 -0.5
complex community Community=Locust bean gum; Passage=4 -0.2 -1.0 +0.4 -0.2 -0.3
phage phage_bap4 -0.4 +0.0 -0.1 -0.3 -0.2
complex community Community=guar; Passage=4 -0.6 +0.1 -0.4 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 +0.1 -0.3 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -1.0 +0.3 +0.1 -0.1 +0.1
no phage control no phage control -0.6 +0.1 +0.3 -0.0 -0.3
complex community Community=Locust bean gum; Passage=4 +0.3 -0.5 -0.1 +0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 +0.0 +0.3 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.5 +0.3 -0.1 -0.1 +0.2
complex community Community=Locust bean gum; Passage=1 -0.4 -0.1 -0.2 +0.3 +0.3
complex community Community=guar; Passage=4 +0.5 +0.3 -0.2 -0.3 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.0 -0.1 +0.2 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.2 -0.0 -0.4 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.4 +0.1 -0.1 +0.1 +0.4
phage phage_bap4 -0.4 +0.5 +0.3 -0.0 -0.1
phage phage_bap4 +0.6 +0.1 -0.0 -0.2 -0.2
complex community Community=Locust bean gum; Passage=4 -0.2 +0.9 +0.2 +0.4 -0.8
complex community Community=guar; Passage=4 +0.1 +0.3 +0.4 -0.5 +0.3
complex community Community=Locust bean gum; Passage=4 +0.3 -0.2 +0.6 -0.3 +0.3
complex community Community=Kojac gum; Passage=1 -0.0 +0.3 +0.3 +0.3 -0.0
phage phage_bap4 +0.4 +0.3 +0.3 -0.0 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.5 +0.3 +0.1 -0.0 +0.1
phage phage_bap4 +0.3 +0.6 +0.5 +0.1 -0.2
phage phage_bap4 +0.7 +0.8 +0.6 +0.2 +0.0
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