Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07825	PS417_07830	PS417_07835	PS417_07840	PS417_07845
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	-0.1	-2.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.0	-0.3	-1.1	-1.0
carbon source	L-Valine (C)	-0.4	-0.0	+0.1	-0.2	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.0	-0.3	-1.1	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	-0.3	-1.2	-0.3
motility	inner cut, LB soft agar motility assay	-0.2	+0.1	+0.1	-1.4	-0.2
stress	Choline chloride 300 mM	-0.4	+0.1	+0.2	-0.8	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.1	+0.0	-2.0	+1.0
phage	P. simiae Grant Run MOI 0.1	-0.7	-0.1	+0.0	-0.9	+0.8
stress	Doxycycline hyclate 0.001 mg/ml	-0.2	-0.0	-0.1	+0.9	-1.2
phage	P. simiae OR Antrim MOI 1	+0.8	-0.2	+0.1	-0.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.3	+0.3	-1.1	+0.7
carbon source	L-Valine (C)	+0.4	+0.2	-0.5	-0.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.1	+0.7	-0.7	-0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	+0.0	+0.1	+1.3	-0.6
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	-0.4	-0.1	+0.1	+0.9	+0.6
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	-0.1	+0.0	+1.5	-0.2
carbon source	2-Deoxy-D-Ribose (C)	-0.5	-0.0	+0.2	+0.8	+0.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	-0.4	-0.1	+0.2	+0.6	+0.9
carbon source	2'-Deoxyinosine 5 mM (C)	+0.7	-0.2	+0.1	+1.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.2	-0.4	+0.7	+0.5
phage	Wcs_1	-0.1	-0.1	+0.2	+1.7	-0.1
solid stress	Fraxetin 3 mM; solid stress	+0.3	+0.1	-0.2	+1.5	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-0.2	-0.1	+0.8	+0.9
seeds	Growth on radish seeds for 72 hours	+0.3	+0.1	+0.3	+0.2	+1.0
soil	soil sample 5; outgrowth in LB	+0.1	+0.1	+0.1	+1.3	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.4	+0.3	-0.0	+0.6	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	+0.2	+0.6	+1.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.4	-0.2	+0.1	+0.3	+0.8
stress	methylglyoxal 0.032 vol%	+0.0	+0.5	+0.5	+1.2	+1.1