Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1539 and GFF1540 are separated by 10 nucleotidesGFF1540 and GFF1541 overlap by 11 nucleotidesGFF1541 and GFF1542 are separated by 29 nucleotidesGFF1542 and GFF1543 are separated by 3 nucleotides GFF1539 - RsbT co-antagonist protein RsbRA, at 137,522 to 138,367 GFF1539 GFF1540 - RsbS, negative regulator of sigma-B, at 138,378 to 138,752 GFF1540 GFF1541 - Anti-sigma B factor RsbT, at 138,742 to 139,146 GFF1541 GFF1542 - Anti-sigma B factor RsbT / Phosphoserine phosphatase RsbX (EC 3.1.3.3), at 139,176 to 140,171 GFF1542 GFF1543 - Putative SigmaB asociated two-component system sensor protein, at 140,175 to 141,053 GFF1543
Group Condition GFF1539 GFF1540 GFF1541 GFF1542 GFF1543
complex community Community=arabino-guar; Passage=4 -3.1 N.D. N.D. -4.1 -0.0
complex community Community=arabino-guar; Passage=4 +0.3 N.D. N.D. -5.9 +0.8
complex community Community=Kojac gum; Passage=4 -1.2 N.D. N.D. +0.0 -1.2
complex community Community=guar; Passage=4 +0.2 N.D. N.D. -2.3 +0.5
no phage control no phage control -0.8 N.D. N.D. -0.6 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.8 N.D. N.D. -0.3 -0.1
complex community Community=arabino-guar; Passage=4 +1.5 N.D. N.D. -1.3 -1.4
complex community Community=Locust bean gum; Passage=4 -0.9 N.D. N.D. +0.3 -0.5
complex community Community=Locust bean gum; Passage=4 +0.0 N.D. N.D. -0.2 -1.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.9 N.D. N.D. -0.0 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.7 N.D. N.D. -0.4 +0.1
complex community Community=arabino-guar; Passage=4 +0.7 N.D. N.D. -1.1 +0.1
complex community Community=guar; Passage=4 -1.0 N.D. N.D. +0.5 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.6 N.D. N.D. -1.0 +0.3
complex community Community=Locust bean gum; Passage=1 +0.5 N.D. N.D. -0.4 -0.1
complex community Community=Locust bean gum; Passage=4 -0.6 N.D. N.D. -0.2 +0.9
no phage control no phage control +0.5 N.D. N.D. -0.5 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.4 N.D. N.D. -0.5 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.4 N.D. N.D. -0.5 +0.3
phage phage_bap4 +0.3 N.D. N.D. -0.4 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL +0.8 N.D. N.D. -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 N.D. N.D. -0.2 +0.5
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.3 N.D. N.D. +0.5 +0.1
phage phage_bap4 +0.2 N.D. N.D. +0.5 +0.2
complex community Community=Kojac gum; Passage=1 +0.7 N.D. N.D. -0.0 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.6 N.D. N.D. -0.1 +0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 N.D. N.D. +0.5 +0.3
phage phage_bap4 +0.8 N.D. N.D. +0.4 +0.3
phage phage_bap4 +0.9 N.D. N.D. +0.3 +0.6
phage phage_bap4 +0.8 N.D. N.D. +0.7 +0.8
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