Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1533 and GFF1534 are separated by 33 nucleotidesGFF1534 and GFF1535 are separated by 115 nucleotidesGFF1535 and GFF1536 overlap by 4 nucleotidesGFF1536 and GFF1537 are separated by 10 nucleotides GFF1533 - no description, at 131,070 to 131,960 GFF1533 GFF1534 - Transcriptional regulator, LysR family, at 131,994 to 132,896 GFF1534 GFF1535 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 133,012 to 133,917 GFF1535 GFF1536 - BUG/TctC family periplasmic protein, at 133,914 to 134,897 GFF1536 GFF1537 - FIG01127817: hypothetical protein, at 134,908 to 136,569 GFF1537
Group Condition GFF1533 GFF1534 GFF1535 GFF1536 GFF1537
complex community Community=arabino-guar; Passage=4 -0.8 -0.4 -3.2 -0.6 +0.1
complex community Community=Locust bean gum; Passage=4 +0.2 -0.6 -1.3 -1.0 -0.2
vitamin M9 with Supernatant from Cyptococcus -0.0 -0.3 -2.2 -0.0 -0.1
phage phage_bap4 -0.1 -0.1 -1.7 -0.3 -0.4
phage phage_bap4 -0.7 +0.0 -0.6 -0.6 -0.1
phage phage_bap4 +0.1 -0.1 -0.5 -0.6 -0.4
phage phage_bap4 +0.0 -0.2 -0.2 -0.8 -0.2
complex community Community=guar; Passage=4 +0.4 -0.2 -2.1 +0.4 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 -0.0 -1.6 +0.2 -0.1
no phage control no phage control +0.4 -0.1 -1.0 -0.1 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 -0.1 -1.1 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 -0.1 -0.8 +0.2 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.2 -0.4 -0.3 -0.3
complex community Community=Locust bean gum; Passage=4 -0.9 +0.5 +0.3 -0.6 -0.4
complex community Community=arabino-guar; Passage=4 -0.2 -0.0 -0.4 +0.5 -0.8
phage phage_bap4 +0.3 -0.1 -0.1 -0.4 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.0 -0.8 +0.3 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.3 -0.6 +0.2 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.0 -1.0 +0.3 -0.0
complex community Community=arabino-guar; Passage=4 -0.6 -0.0 +1.1 -0.8 -0.3
vitamin M9 with Supernatant from Cyptococcus -0.3 +0.1 -0.8 +0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.3 -0.7 +0.2 -0.0
phage phage_bap4 +0.5 -0.2 +0.2 -0.4 -0.3
complex community Community=Kojac gum; Passage=4 -0.3 +0.0 -0.4 +0.7 -0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.5 -0.2 -0.1 +0.3 -0.4
complex community Community=Locust bean gum; Passage=4 +0.7 -0.1 -0.4 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.9 +0.1 -0.1 -0.5 +0.1
complex community Community=guar; Passage=4 +0.3 -0.2 +0.7 -0.1 -0.1
complex community Community=Locust bean gum; Passage=4 +0.9 +0.1 +0.2 +0.4 +0.1
complex community Community=guar; Passage=4 +0.6 +0.3 +0.8 -0.0 +0.3
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