Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07765	PS417_07770	PS417_07775	PS417_07780	PS417_07785
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.9	+0.1	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.8	-0.2	-0.1	+0.0
carbon source	L-Valine (C)	-0.2	-1.1	-0.1	-0.0	-0.1
stress	Doxycycline hyclate 0.001 mg/ml	-0.7	-0.9	+0.1	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	-0.3	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-1.1	-0.2	-0.1	+0.1
soil	soil sample 7; outgrowth in LB	-0.1	-1.6	+0.1	+0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.0	-0.1	+0.0	+0.2
stress	Gentamicin 0.008 mg/ml	-0.2	-0.9	+0.3	-0.2	-0.1
soil	soil sample 2; outgrowth in LB	+0.1	-1.1	-0.1	-0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.7	-0.5	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	-1.1	+0.0	-0.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-1.2	+0.1	+0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-1.0	+0.1	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-1.4	+0.2	+0.1	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.8	-0.8	-0.3	+0.0	-0.1
phage	P. simiae Grant Run MOI 0.1	+0.5	-1.0	+0.1	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.7	-0.2	-0.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.9	-0.3	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	+0.8	+0.0	-0.0	+0.1
seeds	Growth on radish seeds for 72 hours	-0.2	+1.0	-0.2	+0.1	-0.2
root	root sample 6; outgrowth in LB	-0.1	+1.1	-0.1	-0.2	-0.1
seeds	Growth on radish seeds for 24 hours	-0.1	+1.2	+0.1	-0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+1.1	-0.2	-0.1	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+1.2	-0.0	+0.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.6	+0.3	+0.1	+0.3
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.3	+0.9	+0.0	+0.1	+0.2
stress	LB_noSalt with Chloride 1100 mM	+0.6	+0.2	+0.2	+0.4	+0.5
phage	P. simiae Grant Run MOI 10	+0.5	+1.4	+0.1	-0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+2.4	+0.2	+0.1	+0.0