Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07740	PS417_07745	PS417_07750	PS417_07755	PS417_07760
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.3	+0.1	-0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-0.2	+0.1	-0.6	+0.0
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.5	-0.1	+0.2	-0.3	-0.4
supernatant control	Vogels_fungal_media 0.1X	-0.7	+0.2	-0.2	-0.6	+0.2
stress	1-ethyl-3-methylimidazolium chloride 200 mM	-0.5	+0.3	+0.1	-0.7	-0.1
phage	P. simiae OR1 MOI 0.1	-0.4	-0.3	-0.4	+0.1	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.2	+0.2	-0.2	+0.5	+0.2
supernatant control	Vogels_fungal_media 0.1X	-0.0	+0.2	+0.4	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.2	-0.1	+0.5	-0.4
motility	outer cut, LB soft agar motility assay	+0.3	+0.2	+0.1	-0.9	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+0.2	+0.7	-0.9	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.1	-0.3	+0.7	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+0.0	+0.6	-0.5	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	+0.1	+0.3	+0.6	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.1	+0.5	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.3	+1.3	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.3	-0.4	+0.3	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8	+0.0	+0.4	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.1	+0.5	+0.0	+0.5
phage	JP1 MOI 10	-0.6	+0.1	+0.3	+0.2	+0.3
stress	methylglyoxal 0.032 vol%	-0.5	-0.0	+0.5	+0.3	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	+0.3	+0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.2	-0.3	+1.1	-0.1
nitrogen source	Adenine (N)	+0.1	-0.1	+0.2	+0.8	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.0	+0.2	+1.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.3	+0.8	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.5	-0.1	+1.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+0.1	-0.3	+1.2	+0.4
nitrogen source	Inosine (N)	-0.5	-0.2	+0.2	+5.2	-0.0
nitrogen source	Urea (N)	-0.6	+0.1	+0.2	+5.6	-0.1