Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07735	PS417_07740	PS417_07745	PS417_07750	PS417_07755
solid stress	80% Methanol 0.5 mM; solid stress	-0.2	-0.5	-0.1	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.7	-0.3	+0.1	-0.4
stress	Doxycycline hyclate 0.001 mg/ml	-0.2	-0.5	-0.2	-0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.4	-0.3	-0.4	+0.3
supernatant control	Vogels_fungal_media 0.1X	+0.3	-0.7	+0.2	-0.2	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	-1.2	+0.2	-0.2	+0.5
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.2	-0.5	+0.3	+0.1	-0.7
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.3	+0.2	+0.7	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.1	-0.1	-0.3	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.8	-0.2	+0.0	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.7	-0.1	+0.3	+0.2
phage	JP1 MOI 1	+0.4	-0.8	+0.1	-0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	-0.3	+0.0	+0.6	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.4	-0.3	+0.1	+0.3	-0.5
motility	outer cut, LB soft agar motility assay	+0.4	+0.3	+0.2	+0.1	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.8	+0.0	+0.4	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.9	+0.1	+0.3	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.5	+0.1	-0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.5	-0.3	+1.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.3	-0.1	+0.5	+0.4
nitrogen source	Cytidine (N)	+0.3	+0.2	-0.3	+0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	-0.2	+0.2	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.1	+0.2	-0.3	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.2	+0.5	-0.1	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.2	+0.1	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.2	+0.3	+0.8	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.6	+0.1	-0.3	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-0.1	+0.0	+0.2	+1.5
nitrogen source	Inosine (N)	-0.0	-0.5	-0.2	+0.2	+5.2
nitrogen source	Urea (N)	+0.1	-0.6	+0.1	+0.2	+5.6