Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF1515 and GFF1516 are separated by 1 nucleotidesGFF1516 and GFF1517 overlap by 4 nucleotidesGFF1517 and GFF1518 are separated by 47 nucleotidesGFF1518 and GFF1519 overlap by 4 nucleotides GFF1515 - Flagellar hook-length control protein FliK, at 110,114 to 111,541 GFF1515 GFF1516 - TRAP-type C4-dicarboxylate transport system, large permease component, at 111,543 to 112,823 GFF1516 GFF1517 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 112,820 to 113,383 GFF1517 GFF1518 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 113,431 to 113,901 GFF1518 GFF1519 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 113,898 to 114,899 GFF1519
Group Condition GFF1515 GFF1516 GFF1517 GFF1518 GFF1519
complex community Community=Kojac gum; Passage=4 -0.5 -0.7 -1.1 +0.1 -0.3
complex community Community=arabino-guar; Passage=4 -0.1 -0.3 -0.5 -1.3 +0.1
complex community Community=arabino-guar; Passage=4 -0.1 +0.3 -1.5 -0.2 +0.1
phage phage_bap4 -0.1 -0.2 -0.5 -0.3 -0.2
complex community Community=arabino-guar; Passage=4 +0.0 -0.6 -0.3 -0.2 +0.1
complex community Community=Kojac gum; Passage=1 +0.0 -0.2 -0.4 +0.1 -0.6
phage phage_bap4 -0.1 -0.3 -0.3 -0.3 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.1 -0.7 -0.4 +0.3
complex community Community=Locust bean gum; Passage=4 -0.8 -0.1 -0.2 -0.1 +0.3
no phage control no phage control -0.3 -0.0 -0.3 -0.2 -0.1
phage phage_bap4 +0.0 -0.2 -0.6 +0.1 -0.2
complex community Community=guar; Passage=4 -0.0 -0.2 +0.0 -0.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.2 -0.1 -0.2 -0.3
complex community Community=Locust bean gum; Passage=4 -0.3 -0.0 +0.1 -0.2 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.1 -0.1 -0.3 -0.3
phage phage_bap4 -0.0 +0.0 +0.0 -0.1 -0.5
phage phage_bap4 +0.1 -0.2 -0.1 -0.1 -0.3
complex community Community=guar; Passage=4 -0.2 -0.6 +0.3 -0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.1 -0.2 -0.2 -0.3
complex community Community=guar; Passage=4 -0.6 -0.1 -0.2 +0.0 +0.5
complex community Community=Locust bean gum; Passage=4 -0.3 +0.1 +0.1 -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 +0.1 -0.1 -0.5 +0.0
no phage control no phage control +0.2 -0.0 -0.4 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.2 -0.2 -0.1 +0.3
complex community Community=Locust bean gum; Passage=4 -0.3 +0.6 +0.0 -0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 +0.3 -0.2 -0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus -0.1 -0.3 +0.3 +0.0 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.2 +0.5 -0.1 +0.0
complex community Community=guar; Passage=4 -0.1 +0.7 -0.7 -0.1 +0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 -0.3 +0.3 +0.1 +0.1
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