Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07700	PS417_07705	PS417_07710	PS417_07715	PS417_07720
stress	Benzalkonium Chloride 0.012 mg/ml	-0.1	-0.1	-5.0	N.D.	N.D.
carbon source	octanoate (C)	+0.7	-0.2	-5.2	N.D.	N.D.
stress	Tetracycline 0.001 mg/ml	+0.1	-0.3	-4.3	N.D.	N.D.
soil	soil sample 7; outgrowth in LB	-0.2	-0.3	-4.1	N.D.	N.D.
stress	Doxycycline hyclate 0.001 mg/ml	-0.2	+0.0	-4.3	N.D.	N.D.
carbon source	octanoate (C)	+0.9	-0.2	-5.2	N.D.	N.D.
stress	Nalidixic 0.015 mg/ml	-0.3	-0.1	-3.9	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-0.0	-2.2	N.D.	N.D.
stress	Nalidixic 0.025 mg/ml	-0.3	-0.2	-3.8	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	+0.1	-2.8	N.D.	N.D.
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.9	-0.2	-2.3	N.D.	N.D.
stress	Chloramphenicol 0.015 mg/ml	+0.3	-0.1	-3.0	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-0.2	-1.5	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.3	-2.0	N.D.	N.D.
phage	JP1 MOI 1	-3.0	-0.0	+0.3	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.4	-2.8	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.5	-1.5	N.D.	N.D.
stress	Chloramphenicol 0.0075 mg/ml	+0.5	-0.2	-2.3	N.D.	N.D.
solid stress	Fraxetin 3 mM; solid stress	+0.8	-0.6	-2.2	N.D.	N.D.
soil	soil sample 5; outgrowth in LB	+0.5	+0.2	-2.7	N.D.	N.D.
stress	methylglyoxal 0.032 vol%	+0.6	-0.5	-1.9	N.D.	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.8	+0.1	-2.8	N.D.	N.D.
soil	soil sample 6; outgrowth in LB	+0.6	+0.1	-2.4	N.D.	N.D.
stress	R2A with Fusaric 120 ug/mL	+0.6	+0.2	-2.2	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.8	+0.1	-2.2	N.D.	N.D.
soil	soil sample 2; outgrowth in LB	+0.7	+0.3	-2.3	N.D.	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+1.1	-0.6	-1.1	N.D.	N.D.
carbon source	L-Valine (C)	-2.7	-0.1	+2.3	N.D.	N.D.
seeds	Growth on radish seeds for 72 hours	+1.6	-0.3	-1.4	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+1.1	+1.6	N.D.	N.D.