Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00750	PS417_00755	PS417_00760	PS417_00765	PS417_00770
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-4.2	-0.0	-0.1	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	-4.2	-0.2	-0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-4.1	+0.0	-0.0	+0.4
motility	outer cut, LB soft agar motility assay	-0.1	-4.3	+0.0	-0.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-4.2	+0.1	-0.0	+0.1
phage	P. simiae ORA MOI 0.1	-0.3	-3.8	-0.1	-0.0	+0.2
solid stress	Fraxetin 2 mM; solid stress	-0.7	-3.7	+0.2	+0.0	+0.1
solid stress	Fraxetin 3 mM; solid stress	-0.3	-3.6	-0.1	+0.1	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.3	-3.6	-0.0	-0.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-4.0	+0.1	-0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-3.3	+0.0	-0.0	-0.1
stress	Phosphomycin 0.002 mg/ml	-0.2	-3.3	-0.0	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-3.5	-0.1	+0.1	+0.0
supernatant control	Vogels_fungal_media 0.1X	-0.1	-3.1	-0.1	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-4.1	+0.3	+0.1	+0.0
phage	P. simiae Grant Run MOI 0.1	+0.1	-3.6	+0.0	-0.1	+0.1
phage	JP1 MOI 0.1	+0.2	-3.2	-0.1	-0.1	-0.0
stress	Phosphomycin 0.003 mg/ml	+0.2	-3.2	+0.1	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-4.1	+0.4	+0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-3.2	+0.2	+0.2	-0.0
phage	P. simiae OR Antrim MOI 1	-0.3	-2.2	+0.3	-0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	-3.1	+0.1	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-2.2	+0.3	+0.0	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+2.4	-0.1	-0.2	-0.3
seeds	Growth on radish seeds for 72 hours	+0.0	+2.4	-0.2	-0.1	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	+1.2	+1.3	+0.1	-0.1	+0.2
carbon source	L-Valine (C)	+0.8	+1.4	-0.1	+0.3	+0.3
liquid stress	Fraxetin 2 mM; liquid stress	+1.7	+1.9	+0.1	-0.0	+0.1
liquid stress	80% Methanol 3 mM; liquid stress	+1.7	+2.3	+0.0	+0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+3.3	+0.2	-0.0	+0.4