Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_07615	PS417_07620	PS417_07625	PS417_07630	PS417_07635
soil	soil sample 6; outgrowth in LB	-0.2	-4.1	-0.1	-0.0	-0.8
seeds	Growth on radish seeds for 72 hours	-0.8	-2.9	-0.1	-0.3	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	-3.4	-0.2	-0.7	+0.1
motility	outer cut, LB soft agar motility assay	-0.5	-3.6	+0.1	+0.4	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	-3.5	-0.0	-0.2	-0.1
motility	outer cut, LB soft agar motility assay	-0.6	-2.7	-0.2	-0.0	-0.9
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-2.6	-1.8	+0.0	-0.0	+0.0
liquid stress	Fraxetin 3 mM; liquid stress	-4.0	-0.0	-0.1	-0.1	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-3.2	+0.1	-0.3	+0.0
motility	outer cut, LB soft agar motility assay	-0.5	-2.4	+0.0	-0.1	-1.2
soil	soil sample 2; outgrowth in LB	+0.1	-3.3	-0.3	+0.1	-0.7
stress	Polymyxin B sulfate 0.006 mg/ml	+0.1	-3.7	-0.1	+0.0	-0.3
motility	inner cut, LB soft agar motility assay	-0.2	-2.5	+0.3	-0.2	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-2.8	-0.1	+0.3	-0.5
motility	inner cut, LB soft agar motility assay	-0.6	-2.7	+0.2	-0.1	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.6	-1.8	+0.0	-0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-3.5	+0.2	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	-1.7	+0.1	-0.2	+0.0
carbon source	2-Deoxy-D-Ribose (C)	-2.9	-0.9	+0.0	+0.3	-0.4
soil	soil sample 3; outgrowth in LB	+0.1	-2.7	-0.1	-0.2	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.7	-2.2	-0.0	+0.2	-0.1
solid stress	Fraxetin 3 mM; solid stress	-2.7	+0.9	-0.3	-0.3	-1.2
stress	Cisplatin 0.01 mg/ml	+0.2	-0.6	+0.2	+0.5	-3.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.1	-3.1	-0.2	+0.2	-0.3
stress	Gentamicin 0.008 mg/ml	-0.3	-2.8	-0.4	+0.0	+1.6
solid stress	Fraxetin 3 mM; solid stress	-1.2	+1.3	-0.4	-0.6	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.8	-0.8	-0.0	-0.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+2.5	-1.3	+0.2	+0.7	-0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+4.0	-0.9	+0.1	-0.3	-0.4
stress	R2A with Fusaric 120 ug/mL	+1.9	+1.4	-0.2	-0.3	+0.3